polyprotein

Euk-Vir

Sweet_potato_badnavirus_B

polyprotein__YP_002916056__Sweet_potato_badnavirus_B__647294

Identity

62.4 mean pLDDT

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Caulimoviridae› Badnavirus› Sweet_potato_badnavirus_B

TaxID: 647294

Singleton — not in a non-trivial cluster

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 87-263

PDB

Domain cluster: rep: putative_P3_protein__YP_010087626__Cytorhabdovirus_fragariae__2676436__D7-146

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01107.24 best	MP	37.4	2.80e-09	80.8%	60.7%

D2 high residues 857-939

PDB

D3 high residues 982-1028

PDB

Domain cluster: rep: polyprotein__YP_004581512__Sweet_potato_pakakuy_virus__2034762__D995-1041

D4 medium residues 662-725

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3gmfA02	1.10.40.110	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 ›	0.64	50.0	4.39e-01	89.1%	70.9%
3nwoA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.59	43.0	2.75e-01	76.6%	39.1%
2jnsA01	1.20.1270.220	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.53	47.0	4.33e-01	96.9%	84.0%
2py6A01	1.20.1270.160	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.52	41.0	3.99e-01	89.1%	91.8%
1sg7A00	1.10.1740.70	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB	0.52	40.0	3.80e-01	82.8%	73.3%
2wn5A01	3.90.176.10	Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1	0.51	44.0	3.18e-01	96.9%	98.5%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3435812	3711.1.1.0 ↗	alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein	0.61	46.0	3.75e-01	82.8%	77.6%
3693753	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.60	43.0	4.05e-01	78.1%	81.2%
3774408	544.1.1.0 ↗	alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18	0.57	43.0	3.66e-01	84.4%	82.5%
4991128	101.1.10.3 ↗	alpha arrays › HTH › HTH › Cyclin-like › TFIIB	0.56	45.0	4.12e-01	96.9%	72.6%
3182404	7579.1.1.44 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6	0.55	42.0	2.64e-01	93.8%	13.5%
3899100	110.1.1.11 ↗	alpha arrays › DEATH domain › DEATH domain › DEATH domain › HSR	0.54	36.0	3.47e-01	92.2%	58.7%
4205790	101.1.1.42 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2	0.52	41.0	3.81e-01	84.4%	71.2%
3163616	101.1.1.42 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2	0.51	40.0	3.49e-01	84.4%	58.5%
3404906	4044.1.1.0 ↗	alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins	0.50	41.0	3.62e-01	95.3%	86.0%

D5 medium residues 741-830

PDB

Domain cluster: rep: capsid_protein__YP_007761643__Rose_yellow_vein_virus__1213588__D279-371

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22909.2 best	Caulimovir_coat_dom	115.4	2.30e-33	100.0%	78.8%

D6 medium residues 1050-1119

PDB

Domain cluster: representative