←Back to structures

polyprotein

Euk-Vir

Sweet_potato_pakakuy_virus

polyprotein__YP_004581512__Sweet_potato_pakakuy_virus__2034762

Identity

Accession:
YP_004581512 ↗
Protein ID:
polyprotein
Kingdom:
euk

Quality

61.9 mean pLDDT

Taxonomy

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Caulimoviridae› Badnavirus› Sweet_potato_pakakuy_virus

TaxID: 2034762

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 85-262
PDB
Domain cluster: rep: putative_P3_protein__YP_010087626__Cytorhabdovirus_fragariae__2676436__D7-146
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01107.24 best MP 30.3 4.30e-07 84.3% 59.7%
D2 high residues 749-835
PDB
Domain cluster: rep: capsid_protein__YP_007761643__Rose_yellow_vein_virus__1213588__D279-371
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22909.2 best Caulimovir_coat_dom 112.4 2.10e-32 100.0% 76.1%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.67 39.0 4.07e-01 88.5% 61.4%
3llkA02 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.66 53.0 4.54e-01 88.5% 56.6%
1sxjE03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.62 52.0 5.05e-01 95.4% 100.0%
1vb5A01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.61 52.0 5.16e-01 98.9% 100.0%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.60 42.0 3.88e-01 86.2% 56.2%
2ksfA00 1.20.120.620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Backbone structure of the membrane domain of e. Coli histidine kinase receptor kdpd, 0.59 46.0 4.39e-01 87.4% 88.8%
4e6hA00 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 43.0 2.66e-01 79.3% 12.3%
1zoyD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.58 36.0 3.44e-01 88.5% 52.0%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.58 37.0 4.04e-01 87.4% 82.4%
4gzrB00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.58 35.0 3.71e-01 87.4% 68.8%
6xssA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 39.0 4.27e-01 79.3% 88.4%
1hqvA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 44.0 3.64e-01 87.4% 85.4%
7eebI01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 47.0 3.95e-01 97.7% 62.7%
3eslA02 1.25.40.930 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 45.0 4.12e-01 87.4% 87.4%
2mhhA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 43.0 4.19e-01 87.4% 75.0%
7sf8A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.56 46.0 3.42e-01 92.0% 61.8%
3idpB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.56 46.0 3.71e-01 89.7% 77.2%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.56 41.0 3.78e-01 81.6% 72.8%
1sfsA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 41.0 3.12e-01 79.3% 85.0%
2dt5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 4.18e-01 81.6% 93.2%
6wh0A01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.54 40.0 3.39e-01 80.5% 49.3%
3keoA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 4.07e-01 77.0% 91.7%
3v2lA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.52 40.0 3.64e-01 83.9% 99.2%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 41.0 3.64e-01 88.5% 97.0%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 36.0 3.67e-01 78.2% 75.0%
1pujA02 1.10.1580.10 Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › 0.52 42.0 4.17e-01 93.1% 100.0%
1w98B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 35.0 3.21e-01 94.3% 53.5%
1ac1A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 43.0 3.44e-01 97.7% 52.7%
3aleA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.50 44.0 3.75e-01 98.9% 75.5%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3342226 170.1.1.16 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Caulimovir_coat_dom 0.87 83.0 7.40e-01 100.0% 75.7%
3319520 170.1.1.16 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Caulimovir_coat_dom 0.81 70.0 7.14e-01 93.1% 98.8%
3997796 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.74 66.0 6.37e-01 100.0% 90.0%
3931389 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.74 58.0 6.18e-01 88.5% 100.0%
3928076 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.71 61.0 6.16e-01 98.9% 96.5%
3817236 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.71 59.0 6.11e-01 97.7% 98.8%
3538620 170.2.1.7 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF4939 0.71 58.0 6.05e-01 94.3% 100.0%
3906319 170.2.1.7 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF4939 0.71 59.0 6.14e-01 94.3% 100.0%
3927454 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.71 61.0 5.93e-01 100.0% 86.3%
3888098 170.1.1.32 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › DUF4939 0.70 58.0 6.07e-01 94.3% 100.0%
3858587 170.2.1.12 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › Retrotrans_gag 0.70 59.0 6.01e-01 96.6% 97.6%
3929757 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.69 56.0 5.93e-01 89.7% 100.0%
3841733 170.2.1.7 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF4939 0.68 55.0 5.72e-01 90.8% 100.0%
3566330 170.2.1.7 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › DUF4939 0.67 53.0 5.58e-01 85.1% 100.0%
3937527 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.65 56.0 5.53e-01 98.9% 94.7%
3490900 108.1.1.132 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7, EF-hand_8 0.65 50.0 4.03e-01 85.1% 43.3%
3577932 108.1.1.39 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › P2R3B_EF-hand 0.63 48.0 4.86e-01 82.8% 87.1%
3504090 108.1.1.39 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › P2R3B_EF-hand 0.62 48.0 4.85e-01 83.9% 88.2%
3720113 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.62 45.0 4.53e-01 79.3% 81.1%
3596336 109.4.1.934 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ATR 0.61 45.0 3.28e-01 78.2% 49.2%
3470890 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 38.0 3.61e-01 88.5% 52.4%
3576811 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 43.0 3.11e-01 77.0% 41.2%
3259173 108.1.1.25 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4 0.59 43.0 4.06e-01 79.3% 67.3%
None — 0.59 44.0 4.23e-01 81.6% 73.0%
5071598 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.58 43.0 3.63e-01 100.0% 46.9%
3926917 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 42.0 3.88e-01 78.2% 58.3%
4381754 108.1.1.25 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4 0.57 46.0 4.18e-01 90.8% 90.4%
3520972 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 48.0 3.23e-01 100.0% 56.9%
5069584 109.4.1.210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.56 40.0 3.09e-01 78.2% 49.8%
3581248 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 40.0 4.09e-01 78.2% 84.7%
4943724 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 43.0 2.94e-01 90.8% 69.4%
3290705 101.1.2.81 ↗ alpha arrays › HTH › HTH › winged helix domain › Put_DNA-bind_N 0.53 40.0 4.03e-01 81.6% 83.5%
None — 0.53 38.0 4.07e-01 78.2% 92.0%
3598559 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 38.0 3.78e-01 75.9% 80.0%
3600292 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 37.0 4.01e-01 77.0% 94.3%
4996707 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.52 42.0 4.39e-01 100.0% 97.5%
4667980 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 4.01e-01 78.2% 92.0%
D3 high residues 865-951
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00098.29 best zf-CCHC 28.5 1.60e-06 20.7% 100.0%
PF13696.12 zf-CCHC_2 27.8 2.40e-06 19.5% 81.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5025304 304.24.1.5 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N 0.59 38.0 4.28e-01 86.2% 87.7%
3506057 396.1.1.0 ↗ few secondary structure elements › CCHC-type 1 zinc finger › Retrovirus zinc finger-related domains › Retrovirus zinc finger-related domains 0.53 30.0 3.73e-01 88.5% 92.6%
D4 high residues 995-1041
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.74 56.0 4.63e-01 95.7% 45.5%
1r79A01 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.73 63.0 6.01e-01 100.0% 85.5%
5dinA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.72 49.0 3.65e-01 78.7% 28.3%
2dloA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.72 58.0 4.85e-01 89.4% 54.3%
2miuA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.71 56.0 4.46e-01 89.4% 43.9%
1e53A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.71 60.0 5.67e-01 100.0% 79.7%
4qf3A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.71 52.0 4.92e-01 80.9% 84.2%
3ztgA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.70 48.0 3.93e-01 78.7% 38.0%
4b6dB00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.69 56.0 5.36e-01 100.0% 77.2%
2co8A00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.69 55.0 4.56e-01 87.2% 51.2%
2yuuA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.69 57.0 4.85e-01 100.0% 55.4%
2vp7A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.68 53.0 4.79e-01 87.2% 93.9%
2miqA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.68 49.0 3.96e-01 78.7% 51.1%
4bf2A02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.65 51.0 3.49e-01 89.4% 37.5%
2aklA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.64 36.0 3.78e-01 95.7% 55.8%
1y8fA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.64 52.0 5.18e-01 100.0% 90.2%
1v87A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 50.0 4.32e-01 100.0% 69.4%
2rowA01 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.62 51.0 4.57e-01 100.0% 81.7%
3m7nA03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.58 34.0 3.74e-01 87.2% 61.8%
1iq8A03 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.58 39.0 3.48e-01 70.2% 93.2%
4f03A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 48.0 3.85e-01 100.0% 87.6%
5tabA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 41.0 4.05e-01 80.9% 100.0%
1jdpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 39.0 2.64e-01 72.3% 98.3%
2fnoA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 47.0 3.84e-01 100.0% 79.8%
3q8dA02 1.20.1440.120 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain 0.54 37.0 2.69e-01 74.5% 29.2%
1nuiA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 36.0 3.71e-01 97.9% 76.7%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.53 37.0 3.46e-01 76.6% 90.8%
2yvrA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 35.0 3.61e-01 78.7% 75.6%
3vskA01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.52 42.0 3.21e-01 100.0% 52.6%
2kvaA01 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.52 45.0 3.25e-01 100.0% 43.3%
3uowB01 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.52 43.0 2.97e-01 100.0% 42.5%
1m2vB03 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.52 35.0 3.32e-01 78.7% 54.8%
ECOD (92)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3375959 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.85 72.0 7.12e-01 100.0% 88.0%
5065866 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.85 59.0 5.78e-01 74.5% 68.0%
3374430 375.4.1.0 ↗ few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like 0.85 64.0 6.89e-01 87.2% 97.4%
3230993 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.84 67.0 6.38e-01 100.0% 74.5%
3815420 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.82 74.0 7.02e-01 100.0% 90.9%
3830343 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.81 73.0 5.81e-01 100.0% 52.2%
3728775 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.79 59.0 4.82e-01 83.0% 44.7%
3671431 376.1.1.40 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 0.79 57.0 5.83e-01 76.6% 80.0%
3704456 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.78 57.0 5.66e-01 78.7% 74.0%
3820281 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.78 70.0 6.90e-01 100.0% 96.0%
4934214 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.78 67.0 6.06e-01 100.0% 71.4%
3669337 376.1.2.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › zf-RING_11 0.78 69.0 6.02e-01 100.0% 67.1%
3832466 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.78 69.0 5.13e-01 100.0% 46.1%
3853521 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.77 56.0 5.13e-01 78.7% 60.0%
3558133 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.77 63.0 5.64e-01 89.4% 70.8%
3818356 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.77 66.0 5.69e-01 97.9% 62.7%
3717337 376.1.1.165 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › FYVE 0.76 56.0 4.77e-01 78.7% 68.0%
3914982 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.76 61.0 5.66e-01 89.4% 73.3%
3962784 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 52.0 5.82e-01 83.0% 97.1%
3599588 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.75 63.0 4.78e-01 100.0% 40.0%
3599075 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.75 53.0 5.03e-01 74.5% 96.4%
3700774 376.1.2.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PF26235 0.75 65.0 6.06e-01 100.0% 88.3%
3803637 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.75 62.0 6.00e-01 95.7% 83.6%
4929513 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 53.0 5.69e-01 78.7% 90.0%
3629373 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.74 65.0 6.05e-01 100.0% 80.0%
3903590 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.74 60.0 5.93e-01 100.0% 86.0%
3669336 376.1.2.12 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › zf-RING_2 0.74 63.0 5.29e-01 100.0% 55.3%
3803854 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.74 60.0 5.71e-01 97.9% 76.4%
3597026 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.74 63.0 6.07e-01 100.0% 96.4%
3771418 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.74 59.0 5.84e-01 100.0% 84.0%
4842718 376.1.2.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_4 0.73 63.0 5.70e-01 100.0% 71.9%
3921354 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.73 61.0 5.49e-01 100.0% 67.7%
3837111 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.73 63.0 5.69e-01 100.0% 72.3%
3330286 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.73 49.0 5.26e-01 74.5% 82.5%
3655538 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.72 62.0 5.19e-01 100.0% 58.8%
3822106 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.72 58.0 5.59e-01 97.9% 78.2%
4967026 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.72 57.0 5.22e-01 91.5% 93.8%
3309792 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.72 60.0 5.58e-01 95.7% 76.7%
3885997 376.1.2.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_4 0.72 61.0 4.72e-01 100.0% 41.8%
3712416 375.1.1.187 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zf_2nd_IFT121 0.72 52.0 4.58e-01 78.7% 52.9%
3815565 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.71 59.0 5.01e-01 100.0% 55.0%
3754819 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.71 57.0 5.93e-01 97.9% 100.0%
3809314 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.71 55.0 5.49e-01 97.9% 82.0%
3859003 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.71 53.0 4.28e-01 80.9% 43.3%
3808899 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.71 58.0 4.41e-01 95.7% 41.7%
3367727 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.71 60.0 4.50e-01 97.9% 40.0%
3819551 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.70 60.0 3.62e-01 95.7% 15.4%
4945028 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 61.0 5.29e-01 100.0% 75.7%
3938044 376.1.2.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_4 0.70 57.0 4.60e-01 100.0% 46.2%
3706927 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.70 55.0 5.06e-01 85.1% 93.3%
3837041 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.70 61.0 5.36e-01 100.0% 70.0%
3803134 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.70 58.0 5.39e-01 93.6% 76.7%
4075761 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.70 59.0 5.46e-01 100.0% 75.0%
3700825 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.70 56.0 4.41e-01 87.2% 60.0%
3706871 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 52.0 3.31e-01 83.0% 68.0%
3834189 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.70 57.0 4.19e-01 97.9% 33.8%
3861853 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.69 56.0 4.99e-01 100.0% 62.9%
3259718 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.69 53.0 4.11e-01 87.2% 37.1%
3423210 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.69 55.0 4.34e-01 89.4% 63.0%
3465532 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.69 55.0 4.94e-01 93.6% 82.9%
3802409 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.69 60.0 4.25e-01 100.0% 50.3%
3830422 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.69 58.0 4.21e-01 100.0% 37.2%
3817972 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.69 58.0 5.94e-01 97.9% 100.0%
3332568 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.69 58.0 4.80e-01 100.0% 52.2%
3229027 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.69 54.0 5.10e-01 100.0% 71.7%
3665380 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.69 57.0 4.92e-01 100.0% 73.8%
3516861 377.1.1.51 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM_FHL2-3_N 0.68 60.0 5.93e-01 100.0% 96.0%
3821671 376.1.1.63 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › C1_2 0.68 58.0 4.37e-01 100.0% 38.4%
3810662 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.68 57.0 4.00e-01 97.9% 55.0%
4014164 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.68 55.0 5.03e-01 100.0% 67.7%
3898573 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.68 53.0 4.90e-01 100.0% 66.2%
3315604 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.68 56.0 5.16e-01 100.0% 75.4%
3436712 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.67 57.0 5.18e-01 100.0% 80.0%
None — 0.67 48.0 3.88e-01 78.7% 54.7%
3833400 376.1.1.63 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › C1_2 0.66 57.0 4.26e-01 100.0% 39.2%
3808262 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.66 55.0 4.42e-01 100.0% 50.5%
3817565 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.66 54.0 5.35e-01 93.6% 88.0%
3825862 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.66 56.0 4.44e-01 100.0% 48.6%
3677066 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.66 54.0 4.72e-01 100.0% 76.2%
3343538 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.66 53.0 4.70e-01 97.9% 68.0%
3540261 376.1.2.28 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › zf-FCS 0.66 53.0 5.15e-01 100.0% 81.8%
3887522 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.65 53.0 4.57e-01 100.0% 60.0%
3805691 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.65 53.0 4.24e-01 100.0% 43.6%
3804164 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.65 53.0 4.26e-01 100.0% 46.7%
3807932 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.64 54.0 4.20e-01 100.0% 45.1%
3573504 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.64 52.0 4.63e-01 100.0% 64.0%
3446786 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.64 53.0 4.59e-01 100.0% 63.7%
3268433 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.64 52.0 4.55e-01 100.0% 73.8%
3468303 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.63 51.0 4.38e-01 100.0% 63.5%
4602865 377.1.1.11 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C 0.62 46.0 3.26e-01 83.0% 30.6%
3460948 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.62 51.0 4.28e-01 100.0% 73.3%
5029198 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 38.0 3.93e-01 93.6% 77.8%
D5 medium residues 645-748
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.66 32.0 3.62e-01 81.7% 59.2%
3cuqC01 1.10.10.570 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › """Winged helix"" DNA-binding domain. Chain C. Domain 1" 0.55 40.0 4.11e-01 75.0% 92.9%
1q8cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.53 41.0 3.88e-01 84.6% 81.1%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 32.0 3.50e-01 88.5% 77.4%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3324259 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.90 77.0 8.09e-01 88.5% 98.9%
3568444 304.9.1.37 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PNMA 0.71 52.0 5.85e-01 97.1% 100.0%
3177791 170.1.1.37 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › PF29703 0.69 54.0 5.67e-01 87.5% 91.6%
3796999 605.4.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.59 45.0 4.57e-01 80.8% 90.0%