polyprotein

Euk-Vir

Horseradish_latent_virus

polyprotein__YP_006907834__Horseradish_latent_virus__264076

Identity

78.8 mean pLDDT

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Caulimoviridae› Caulimovirus› Horseradish_latent_virus

TaxID: 264076

View cluster (17 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 457-530

PDB

Domain cluster: rep: polyprotein,_partial__YP_010085997__Schefflera_ringspot_virus__2169729__D61-133

D2 high residues 538-674

PDB

Domain cluster: rep: polyprotein__YP_002916057__Sweet_potato_badnavirus_B__647294__D493-623

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17917.8 best	RT_RNaseH	85.3	4.30e-24	83.2%	99.1%
PF17919.8	RT_RNaseH_2	55.2	8.90e-15	60.6%	76.0%

D3 medium residues 19-167

PDB

D4 medium residues 252-320_355-375

PDB

Domain cluster: rep: pol_protein,_partial__YP_002308474__Simian_T-cell_lymphotropic_virus_6__481147__D16-81_108-143

D5 medium residues 321-354_376-443

PDB

Domain cluster: rep: IMGVR_UViG_3300021288_000040-3300021288-Ga0214511_10009611__D472-499_578-609_637-721

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00078.33 best	RVT_1	58.1	1.60e-15	67.7%	35.0%