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polyprotein

Euk-Vir

Maprik_virus

polyprotein__YP_009117085__Maprik_virus__1590836

Identity

Accession:: YP_009117085 ↗
Protein ID:: polyprotein
Kingdom:: euk

Quality

78.1 mean pLDDT

Cluster

View cluster (42 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 114-179

PDB

Domain cluster: rep: polyprotein__YP_009667022__Witwatersrand_virus__1678231__D115-177

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03563.19 best	Bunya_G2	84.9	7.90e-24	100.0%	23.1%

D2 medium residues 180-253_310-335

PDB

Domain cluster: rep: polyprotein__YP_009666977__Serra_do_Navio_virus__45768__D175-249_313-325

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03563.19 best	Bunya_G2	96.2	2.90e-27	87.0%	27.8%

D3 medium residues 254-309

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03563.19 best	Bunya_G2	72.1	6.30e-20	91.1%	18.1%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4670027	377.1.1.6 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e	0.55	38.0	3.55e-01	71.4%	87.1%

D4 medium residues 482-566

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3tjtA01	1.10.287.990	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain	0.52	37.0	3.92e-01	81.2%	90.1%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4575178	606.1.1.0 ↗	alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain	0.56	42.0	3.29e-01	80.0%	38.9%
3461875	102.1.2.0 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase	0.54	40.0	3.18e-01	81.2%	87.7%
5008445	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.50	37.0	3.90e-01	80.0%	94.7%

D5 medium residues 567-677

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03557.22 best	Bunya_G1	30.6	1.60e-07	100.0%	13.9%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6s8bA01	1.10.520.30	Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain	0.63	50.0	4.59e-01	85.6%	93.2%
6xy4A01	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.52	36.0	3.55e-01	73.0%	78.9%
3fhnA04	1.20.58.670	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D	0.51	36.0	3.49e-01	98.2%	64.1%
4qgpB00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.50	37.0	3.80e-01	84.7%	79.4%
4ar9A02	1.10.390.20	Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 ›	0.50	37.0	3.49e-01	79.3%	62.7%

D6 medium residues 700-782

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03557.22 best	Bunya_G1	46.2	3.10e-12	100.0%	9.6%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1uijB01	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.60	31.0	2.51e-01	94.0%	23.6%
2p1gA02	2.30.260.10	Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain	0.56	41.0	3.90e-01	92.8%	64.0%
7xoiD01	2.60.40.1180	Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II	0.56	30.0	2.80e-01	90.4%	40.2%
1ylnA01	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.55	37.0	3.35e-01	95.2%	50.0%
4rt0A00	2.40.10.220	Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains	0.55	33.0	3.07e-01	95.2%	45.0%
2qdeA01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.55	47.0	4.06e-01	98.8%	97.8%
1r0mA01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.55	46.0	4.10e-01	98.8%	96.2%
1jz7A04	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.53	35.0	3.22e-01	95.2%	52.8%
2ox7A02	2.30.30.290	Mainly Beta › Roll › SH3 type barrels. › YopX-like domains	0.50	33.0	3.51e-01	91.6%	79.7%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5033870	11.1.4.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like	0.62	35.0	3.69e-01	92.8%	60.0%
4948929	11.1.4.23 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg	0.56	31.0	3.08e-01	95.2%	47.8%
3972374	219.1.1.96 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_i_TM	0.54	49.0	4.27e-01	100.0%	77.6%
3196282	219.1.1.93 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540	0.54	39.0	3.43e-01	95.2%	51.7%
3731305	219.1.1.93 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540	0.53	37.0	3.23e-01	94.0%	47.2%
3933782	4184.1.1.0 ↗	beta barrels › MFPT repeat › MFPT repeat › MFPT repeat	0.52	35.0	3.48e-01	98.8%	67.1%
4001211	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.51	33.0	3.44e-01	100.0%	70.5%
2532980	219.1.1.53 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Vasohibin	0.51	46.0	3.24e-01	100.0%	55.9%
5029261	219.1.1.0 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases	0.50	45.0	3.70e-01	100.0%	84.0%

D7 medium residues 960-971_1033-1046_1084-1128_1147-1177

PDB

Domain cluster: rep: polyprotein__YP_009667022__Witwatersrand_virus__1678231__D1007-1020_1078-1094_1129-1173_1199-1230

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03557.22 best	Bunya_G1	61.8	6.00e-17	78.4%	10.8%

D8 medium residues 972-1032_1129-1146

PDB

Domain cluster: rep: glycoprotein_precursor__YP_009551599__Avalon_virus__1810950__D843-903_1047-1069

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03557.22 best	Bunya_G1	120.0	1.60e-34	79.8%	7.1%