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polyprotein

Euk-Vir

Tasmanian_aquabirnavirus

polyprotein__YP_009177608__Tasmanian_aquabirnavirus__1721090

Identity

Accession:: YP_009177608 ↗
Protein ID:: polyprotein
Kingdom:: euk

Quality

54.8 mean pLDDT

Taxonomy

Orthornavirae› Birnaviridae› Aquabirnavirus› Tasmanian_aquabirnavirus

TaxID: 1721090

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 179-338

PDB

Domain cluster: rep: polyprotein__YP_009255397__Victorian_trout_aquabirnavirus__1661392__D179-338

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01766.24 best	Birna_VP2	108.6	5.80e-31	100.0%	34.4%

D2 high residues 531-708

PDB

D3 high residues 720-797

PDB

D4 high residues 811-871

PDB

Domain cluster: rep: VP3_protein__YP_052872__Blotched_snakehead_virus__311176__D104-162

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01767.22 best	Birna_VP3	60.5	3.90e-16	100.0%	26.0%

D5 high residues 882-933

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01767.22 best	Birna_VP3	55.4	1.40e-14	100.0%	21.1%

CATH (20)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2r18A02	1.10.8.880	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2	0.95	90.0	8.57e-01	100.0%	88.1%
4fqnC00	1.20.1160.20	Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) ›	0.65	48.0	4.20e-01	100.0%	50.6%
2hoqA02	1.10.150.520	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.63	52.0	4.62e-01	96.2%	64.6%
7wboA01	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.63	52.0	3.67e-01	96.2%	46.7%
3lcvB01	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.62	52.0	5.09e-01	100.0%	91.2%
3tw6A06	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.62	43.0	4.28e-01	100.0%	72.2%
3tw6B03	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.61	50.0	2.91e-01	98.1%	14.8%
1iv8A04	1.10.10.470	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4	0.60	46.0	3.85e-01	100.0%	46.4%
1ywmA02	1.20.1270.150	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Surface Active Protein	0.59	50.0	4.43e-01	96.2%	72.4%
4hdrA01	1.10.1610.10	Mainly Alpha › Orthogonal Bundle › 5,6-Dimethylbenzimidazole Phosphoribosyltransferase; Chain: A; domain 1 › Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (CobT), small domain	0.57	43.0	4.11e-01	100.0%	71.9%
3n5fA01	3.40.630.10	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases	0.57	44.0	2.81e-01	88.5%	30.1%
1r6bX03	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.56	45.0	4.01e-01	100.0%	63.6%
1w6kA03	1.50.10.20	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.56	41.0	2.56e-01	76.9%	78.9%
3vkhB07	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.56	48.0	3.32e-01	98.1%	97.4%
2pjqA01	1.10.472.50	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like	0.56	43.0	3.71e-01	88.5%	59.6%
3fajA00	1.20.120.950	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062	0.55	47.0	3.90e-01	100.0%	59.4%
1q1gA00	3.40.50.1580	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain	0.54	47.0	3.04e-01	96.2%	57.2%
1ryp100	3.60.20.10	Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain	0.53	43.0	2.94e-01	98.1%	24.8%
1vwxQ00	3.100.10.10	Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 ›	0.52	42.0	2.89e-01	90.4%	47.6%
3qpbF00	3.40.50.1580	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain	0.52	44.0	2.87e-01	98.1%	57.4%

ECOD (23)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5014128	2004.1.1.5 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran	0.68	55.0	3.48e-01	90.4%	25.5%
4015710	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.67	57.0	4.93e-01	100.0%	70.6%
3479772	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.67	56.0	5.09e-01	98.1%	70.0%
3709283	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.66	56.0	5.51e-01	96.2%	94.5%
3722053	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.66	55.0	4.82e-01	100.0%	69.4%
3465065	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.66	52.0	4.73e-01	100.0%	64.0%
3658063	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.65	54.0	4.94e-01	100.0%	69.3%
5033498	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.64	53.0	5.39e-01	94.2%	100.0%
3609328	102.1.1.0 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like	0.64	52.0	4.15e-01	96.2%	47.0%
3996657	4979.2.1.1 ↗	alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD	0.63	46.0	4.69e-01	100.0%	88.0%
3208374	4099.1.1.0 ↗	a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like	0.61	47.0	3.56e-01	88.5%	59.3%
3210826	2485.1.1.67 ↗	a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GILT	0.61	51.0	3.45e-01	100.0%	36.4%
4962646	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.60	49.0	5.04e-01	92.3%	98.0%
4950862	518.1.1.1 ↗	alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › CheR_N	0.60	49.0	4.67e-01	100.0%	95.4%
4960056	186.1.1.0 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N	0.60	50.0	4.17e-01	96.2%	90.5%
3236773	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.59	40.0	3.07e-01	73.1%	32.6%
3514302	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.59	48.0	4.28e-01	100.0%	61.2%
4667812	148.1.3.17 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid	0.59	51.0	3.99e-01	100.0%	57.4%
5079723	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.58	49.0	2.99e-01	100.0%	17.9%
3278587	191.1.1.1 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1	0.58	39.0	2.83e-01	71.2%	87.1%
3630661	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.56	48.0	4.25e-01	100.0%	67.5%
3972662	5102.1.1.1 ↗	alpha arrays › C-terminal helical domain in Atu1540-like proteins › C-terminal helical domain in Atu1540-like proteins › C-terminal helical domain in Atu1540-like proteins › ParBc_2	0.55	46.0	3.73e-01	100.0%	81.8%
4214986	148.1.1.13 ↗	alpha arrays › Histone-like › Histone-related › Histone › PCP_red	0.51	43.0	4.34e-01	98.1%	96.2%

D6 medium residues 30-165_347-380

PDB

D7 medium residues 392-460

PDB