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polyprotein

Euk-Vir

Petunia_chlorotic_mottle_virus

polyprotein__YP_009342469__Petunia_chlorotic_mottle_virus__1935922

Identity

Accession:: YP_009342469 ↗
Protein ID:: polyprotein
Kingdom:: euk

Quality

40.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-66

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1oaiA00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.65	44.0	4.52e-01	90.3%	74.6%
1s8nA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.65	46.0	4.72e-01	79.0%	79.3%
1j1vA00	1.10.1750.10	Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain	0.63	51.0	4.44e-01	88.7%	59.6%
1iv8A03	1.10.150.200	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Maltooligosyl trehalose synthase; domain 3	0.62	48.0	4.35e-01	85.5%	95.3%
2yviA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.61	51.0	4.63e-01	100.0%	92.1%
2e6oA00	1.10.30.10	Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain	0.58	44.0	4.06e-01	96.8%	62.1%
3ezqA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.56	47.0	3.99e-01	100.0%	94.8%
1j09A04	1.10.8.70	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1	0.55	36.0	3.93e-01	80.6%	85.4%
2f8lA01	1.10.150.470	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.55	42.0	3.88e-01	83.9%	70.4%
1o82A00	1.20.225.10	Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48	0.54	39.0	3.86e-01	80.6%	88.6%
1n1cA01	1.20.120.1820	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.53	47.0	3.81e-01	98.4%	89.6%
2qguA02	1.10.10.640	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › phospholipid-binding protein	0.51	41.0	3.87e-01	90.3%	79.5%
1ds8M02	1.20.85.10	Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like	0.51	37.0	2.84e-01	100.0%	31.6%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3497842	101.1.1.69 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_7	0.64	42.0	3.86e-01	79.0%	49.4%
4033259	632.2.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains	0.58	38.0	3.97e-01	88.7%	74.5%
3391469	109.4.1.934 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ATR	0.58	42.0	3.60e-01	77.4%	85.0%
4522200	3684.1.1.1 ↗	alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › DUF615	0.53	45.0	4.09e-01	96.8%	71.8%
5058184	7516.1.1.10 ↗	a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CofC	0.52	43.0	2.96e-01	100.0%	73.1%
4337997	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.51	37.0	3.44e-01	83.9%	64.0%

D2 high residues 636-774

PDB

D3 medium residues 320-373

PDB

D4 medium residues 374-467

PDB

D5 medium residues 817-974

PDB

D6 medium residues 975-1119

PDB