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polyprotein

Euk-Vir

Tapara_virus

polyprotein__YP_009346022__Tapara_virus__1926501

Identity

Accession:
YP_009346022 ↗
Protein ID:
polyprotein
Kingdom:
euk

Quality

72.0 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Phenuiviridae› Phlebovirus› Tapara_virus

TaxID: 1926501

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-129
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6iccA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.61 35.0 3.97e-01 87.7% 74.4%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 41.0 4.63e-01 70.2% 100.0%
2zplB00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.59 35.0 3.84e-01 83.3% 70.2%
5w3xD01 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.59 31.0 3.96e-01 78.1% 89.2%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.57 40.0 4.18e-01 93.9% 77.8%
1g13A00 2.70.220.10 Mainly Beta › Distorted Sandwich › Ganglioside M2 Activator Protein; Chain: A, › Ganglioside GM2 activator 0.56 44.0 3.97e-01 84.2% 99.4%
3tiiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.56 31.0 3.82e-01 70.2% 92.3%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 33.0 3.49e-01 83.3% 66.7%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 34.0 3.86e-01 78.9% 83.9%
2q7aA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.97e-01 89.5% 89.5%
3cswC01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.53 37.0 3.88e-01 90.4% 78.3%
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 35.0 3.23e-01 95.6% 52.7%
4edjA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 32.0 3.44e-01 90.4% 71.4%
4it4E01 2.40.30.320 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 34.0 3.44e-01 85.1% 66.7%
3nr5A00 3.40.1000.50 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Repressor of RNA polymerase III transcription Maf1 0.51 39.0 3.54e-01 81.6% 85.4%
3rleA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 32.0 3.30e-01 89.5% 66.3%
1y8tA03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 35.0 3.83e-01 70.2% 98.9%
3iylW03 3.40.50.10760 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Reovirus core 0.50 40.0 3.15e-01 85.1% 89.2%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3389113 11.1.1.536 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.62 48.0 4.38e-01 83.3% 99.4%
3923249 11.1.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › E1_DerP2_DerF2 0.61 48.0 4.31e-01 83.3% 90.6%
4512379 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 38.0 3.77e-01 82.5% 62.4%
5004010 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.56 34.0 3.70e-01 84.2% 72.6%
3993535 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 38.0 4.24e-01 71.1% 100.0%
4015706 221.7.1.0 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 0.55 41.0 4.41e-01 86.8% 95.8%
2130835 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.55 36.0 4.08e-01 71.1% 96.2%
3726450 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 42.0 3.60e-01 85.1% 84.4%
4927614 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 36.0 3.74e-01 86.8% 73.6%
1172110 222.1.1.20 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MFE-2_hydrat-2_N 0.53 29.0 2.66e-01 84.2% 38.2%
3697702 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.52 33.0 3.12e-01 96.5% 51.4%
4451360 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.52 42.0 3.27e-01 88.6% 81.2%
4939836 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.52 38.0 3.28e-01 78.9% 89.2%
4573831 210.1.4.1 ↗ a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase › Asparaginase_2 0.52 43.0 3.28e-01 94.7% 97.0%
3240650 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.52 40.0 4.22e-01 86.8% 90.5%
3598871 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.51 36.0 3.80e-01 71.9% 98.0%
4964675 866.1.1.2 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC 0.51 43.0 3.59e-01 90.4% 89.2%
3288391 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.51 38.0 3.38e-01 78.1% 99.4%
4281928 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.50 34.0 3.02e-01 95.6% 46.5%
3781275 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.50 37.0 3.91e-01 91.2% 85.4%
3486621 7.1.1.10 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.50 32.0 3.49e-01 89.5% 80.0%
4928855 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.50 35.0 3.55e-01 72.8% 100.0%
D2 high residues 630-721
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009304994__Wenzhou_Shrimp_Virus_1__1608095__D240-325
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07243.17 best Phlebovirus_G1 130.2 1.20e-37 100.0% 17.1%
D3 high residues 850-905_1000-1041_1130-1166
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009505328__Badu_phasivirus__1980609__D739-805_894-940_1051-1072
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07245.17 best Phlebovirus_G2 24.1 2.40e-05 54.1% 19.5%
D4 medium residues 303-452
PDB
Domain cluster: rep: Glycoproteins_G1_and_G2_precursor__YP_089671__Sandfly_fever_Naples_virus__206160__D318-463
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07243.17 best Phlebovirus_G1 153.8 7.90e-45 100.0% 27.6%
D5 medium residues 514-579
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07243.17 best Phlebovirus_G1 48.5 6.60e-13 100.0% 11.4%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bwcA01 2.10.70.60 Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 0.60 30.0 3.33e-01 100.0% 54.7%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2324038 1187.1.1.1 ↗ beta complex topology › Phlebovirus glycoprotein Gn › Phlebovirus glycoprotein Gn › Phlebovirus glycoprotein Gn › Phlebovirus_G1 0.73 68.0 4.21e-01 100.0% 20.9%
D6 medium residues 906-999_1042-1129
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009362036__Kigluaik_phantom_orthophasmavirus__1980539__D304-407_471-524
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07245.17 best Phlebovirus_G2 64.3 1.40e-17 56.6% 28.2%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ok8A03 3.30.387.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 3 › Viral Envelope Glycoprotein, domain 3 0.77 36.0 5.29e-01 87.9% 100.0%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 20.0 3.00e-01 77.5% 71.6%
6x4tA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 20.0 2.89e-01 93.4% 63.5%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 20.0 2.65e-01 94.0% 55.8%
6efyA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 21.0 2.84e-01 75.8% 61.2%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1839942 5090.1.1.5 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2 0.97 95.0 7.40e-01 100.0% 66.3%
2531649 5090.1.1.5 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2 0.87 83.0 6.62e-01 100.0% 68.3%
3247901 5090.1.1.5 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2 0.85 81.0 6.77e-01 100.0% 78.6%
2772148 5090.1.1.5 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Phlebovirus_G2 0.85 81.0 6.42e-01 100.0% 67.6%
3940428 5090.1.1.8 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF 0.71 66.0 5.12e-01 100.0% 68.9%
3626193 5090.1.1.8 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF 0.71 66.0 5.12e-01 100.0% 66.1%
3503920 5090.1.1.8 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF 0.70 66.0 5.20e-01 100.0% 68.2%
3938676 5090.1.1.8 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF 0.70 66.0 5.11e-01 100.0% 66.0%
3998845 5090.1.1.8 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF 0.70 65.0 5.13e-01 100.0% 64.7%
3500531 5090.1.1.8 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF 0.70 65.0 5.21e-01 100.0% 71.0%
3245955 5090.1.1.8 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF 0.70 65.0 5.18e-01 100.0% 70.0%
3938228 5090.1.1.8 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF 0.67 63.0 5.04e-01 100.0% 66.1%
4861488 5090.1.1.1 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Flavi_glycoprot 0.63 59.0 4.90e-01 100.0% 73.5%
2330240 5090.1.1.1 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Flavi_glycoprot 0.61 56.0 4.67e-01 100.0% 73.8%
4975017 11.1.1.130 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Inhibitor_I42 0.60 23.0 3.04e-01 75.3% 60.6%
2443887 11.1.1.130 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Inhibitor_I42 0.59 22.0 2.90e-01 74.7% 58.1%
3959517 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.57 26.0 3.85e-01 75.3% 98.8%
3598240 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 24.0 2.97e-01 74.7% 61.8%
2093009 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.51 28.0 3.62e-01 87.9% 99.0%
D7 medium residues 1175-1259
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009666331__Mukawa_virus__1569922__D875-994
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19019.7 best Phlebo_G2_C 116.0 2.10e-33 100.0% 49.7%