Back to structures

polyprotein

Euk-Vir

Bimiti_virus

polyprotein__YP_009507865__Bimiti_virus__1678224

Identity

Accession:
YP_009507865 ↗
Protein ID:
polyprotein
Kingdom:
euk

Quality

75.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 110-194
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03563.19 best Bunya_G2 118.1 6.00e-34 100.0% 29.9%
D2 medium residues 506-583
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t6cA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.61 50.0 3.92e-01 93.6% 64.1%
1ezjA01 1.10.287.320 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Viral phosphoprotein oligmorisation site domain 0.58 37.0 4.08e-01 79.5% 80.6%
4fjqA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.58 44.0 2.91e-01 84.6% 71.5%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 43.0 3.63e-01 82.1% 93.5%
3t69A02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.56 42.0 3.02e-01 80.8% 44.2%
1tujA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.54 39.0 3.43e-01 76.9% 95.1%
8d7hD01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 38.0 3.00e-01 80.8% 71.7%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2504457 7069.1.1.1 alpha complex topology › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Head domain of SBV glycoprotein Gc › Bunya_G1 0.79 71.0 5.09e-01 100.0% 35.3%
4954685 2004.1.1.49 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase 0.65 45.0 2.70e-01 71.8% 18.4%
3289184 2486.1.1.3 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.57 43.0 2.92e-01 84.6% 54.3%
3192731 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 41.0 3.51e-01 84.6% 82.1%
D3 medium residues 584-732
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 48.6 5.90e-13 98.0% 15.6%
D4 medium residues 845-912
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 38.7 5.70e-10 100.0% 7.8%
D5 medium residues 930-1027_1098-1146_1228-1255
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 106.4 2.00e-30 58.3% 11.4%
PF03557.22 Bunya_G1 36.7 2.30e-09 32.0% 6.1%
D6 medium residues 1028-1097_1147-1227
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 114.6 6.60e-33 54.3% 9.2%
PF03557.22 Bunya_G1 147.0 1.00e-42 49.0% 8.4%
D7 medium residues 1256-1347
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03557.22 best Bunya_G1 76.8 1.70e-21 100.0% 10.8%
D8 medium residues 1367-1419
PDB