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polyprotein

Euk-Vir

Punique_virus

polyprotein__YP_010086069__Punique_virus__693015

Identity

Accession:
YP_010086069 ↗
Protein ID:
polyprotein
Kingdom:
euk

Quality

75.6 mean pLDDT

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-126
PDB
Domain cluster: rep: polyprotein__YP_009346022__Tapara_virus__1926501__D16-129
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.59 44.0 4.43e-01 97.2% 76.9%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 41.0 4.51e-01 78.7% 100.0%
2gxfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.97e-01 75.0% 94.1%
1fo0B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 4.10e-01 80.6% 100.0%
1ef1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 38.0 4.27e-01 75.0% 100.0%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 31.0 3.30e-01 89.8% 62.8%
2mcfA00 3.40.50.11630 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 44.0 3.96e-01 98.1% 64.9%
1q8mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.86e-01 80.6% 95.0%
6kbyA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 41.0 2.82e-01 82.4% 80.7%
1ztpA01 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.53 38.0 3.14e-01 76.9% 67.9%
2kanA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 35.0 3.92e-01 75.0% 100.0%
3nr5A00 3.40.1000.50 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Repressor of RNA polymerase III transcription Maf1 0.52 42.0 3.72e-01 86.1% 84.7%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 29.0 3.01e-01 89.8% 54.7%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 40.0 4.08e-01 83.3% 87.6%
1ei5A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 43.0 3.11e-01 92.6% 98.1%
3w2zA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 39.0 3.36e-01 81.5% 95.5%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 43.0 3.19e-01 96.3% 97.7%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3927540 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.71 45.0 4.68e-01 100.0% 69.0%
3282998 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.63 34.0 3.76e-01 100.0% 64.4%
3728947 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.60 41.0 3.56e-01 100.0% 48.4%
3693257 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.57 38.0 2.56e-01 100.0% 19.2%
3813180 210.1.4.1 ↗ a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase › Asparaginase_2 0.57 50.0 3.51e-01 100.0% 98.1%
1644767 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.57 32.0 3.50e-01 100.0% 66.7%
3841538 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.56 37.0 3.83e-01 96.3% 71.0%
3413217 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.56 31.0 3.12e-01 88.0% 50.4%
1148089 210.1.4.1 ↗ a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase › Asparaginase_2 0.55 48.0 3.63e-01 100.0% 96.6%
3235057 210.1.4.1 ↗ a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase › Asparaginase_2 0.55 48.0 3.54e-01 100.0% 100.0%
4245606 304.8.1.98 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GDH_ACT3 0.55 32.0 2.88e-01 79.6% 38.7%
3686555 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.55 36.0 3.13e-01 100.0% 44.4%
3698373 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.55 36.0 3.27e-01 100.0% 50.7%
3416920 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 37.0 4.06e-01 75.0% 90.6%
5465 317.1.1.3 ↗ a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Bles03 0.54 39.0 3.15e-01 76.9% 63.6%
3742312 221.1.1.41 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UN_NPL4 0.54 38.0 4.16e-01 75.0% 100.0%
3637098 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.54 30.0 2.87e-01 89.8% 43.6%
4267972 2003.1.5.49 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_30 0.54 45.0 3.43e-01 90.7% 74.4%
3614763 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 29.0 2.87e-01 89.8% 46.7%
4112182 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 30.0 2.95e-01 89.8% 50.0%
4281928 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.53 37.0 3.19e-01 100.0% 46.5%
4514593 223.1.1.7 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.52 40.0 3.39e-01 81.5% 93.5%
2712978 223.1.1.7 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.52 38.0 3.31e-01 76.9% 93.0%
4381440 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.52 30.0 2.94e-01 89.8% 51.3%
3859550 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.52 29.0 2.86e-01 89.8% 48.3%
4259368 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 29.0 2.88e-01 89.8% 49.2%
3485296 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 29.0 2.97e-01 88.0% 55.2%
3968364 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.51 35.0 3.14e-01 72.2% 74.2%
4410522 223.1.1.7 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.51 37.0 3.28e-01 76.9% 97.0%
3720887 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.50 37.0 3.47e-01 100.0% 62.2%
D2 high residues 615-701
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009304994__Wenzhou_Shrimp_Virus_1__1608095__D240-325
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07243.17 best Phlebovirus_G1 141.0 6.10e-41 100.0% 16.4%
D3 medium residues 303-453
PDB
Domain cluster: rep: Glycoproteins_G1_and_G2_precursor__YP_089671__Sandfly_fever_Naples_virus__206160__D318-463
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07243.17 best Phlebovirus_G1 127.3 8.70e-37 98.7% 27.6%
D4 medium residues 831-889_991-1031_1144-1161
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009505328__Badu_phasivirus__1980609__D739-805_894-940_1051-1072
D5 medium residues 1162-1270
PDB
Domain cluster: rep: glycoprotein_precursor__YP_009666331__Mukawa_virus__1569922__D875-994
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19019.7 best Phlebo_G2_C 150.9 4.00e-44 98.2% 62.0%
D6 medium residues 1271-1324
PDB
Domain cluster: rep: polyprotein__YP_010086162__Alcube_virus__1725367__D1276-1331
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19019.7 best Phlebo_G2_C 64.1 1.80e-17 100.0% 31.6%