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polyprotein_cleavage_product_E3
Euk-VirEverglades_virus
polyprotein_cleavage_product_E3__YP_009509019__Everglades_virus__2083198
Identity
- Accession:
- YP_009509019 ↗
- Protein ID:
- polyprotein_cleavage_product_E3
- Kingdom:
- euk
Quality
89.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-52
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01563.22 best | Alpha_E3_glycop | 76.4 | 2.10e-21 | 100.0% | 84.8% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n40P01 | 1.10.287.2230 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.98 | 92.0 | 8.59e-01 | 100.0% | 89.3% |
| 1a59A02 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.58 | 43.0 | 3.31e-01 | 80.9% | 89.8% |
| 5xtfA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 49.0 | 3.18e-01 | 100.0% | 76.3% |
| 3szeA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.56 | 47.0 | 2.95e-01 | 100.0% | 94.8% |
| 4hteA03 | 1.10.167.30 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › | 0.55 | 42.0 | 3.75e-01 | 95.7% | 98.8% |
| 4r9fA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 42.0 | 2.92e-01 | 97.9% | 73.1% |
| 5w56B02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.53 | 44.0 | 3.30e-01 | 97.9% | 53.1% |
| 4bqnB01 | 3.40.50.12080 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 45.0 | 3.07e-01 | 100.0% | 25.7% |
| 2iyaA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.52 | 40.0 | 2.69e-01 | 93.6% | 89.1% |
| 2gkmA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 37.0 | 2.82e-01 | 78.7% | 54.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 185418 | 3453.1.1.1 ↗ | a+b two layers › Glycoprotein E3 › Glycoprotein E3 › Glycoprotein E3 › Alpha_E3_glycop | 0.98 | 92.0 | 7.98e-01 | 100.0% | 74.6% |
| 3831552 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 50.0 | 3.26e-01 | 93.6% | 26.0% |
| 4472559 | 2005.1.1.30 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › BshC | 0.62 | 52.0 | 3.08e-01 | 93.6% | 17.9% |
| 3406069 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.59 | 47.0 | 3.95e-01 | 100.0% | 62.1% |
| None | — | 0.56 | 43.0 | 3.23e-01 | 95.7% | 63.4% | |
| 3839224 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.56 | 48.0 | 3.51e-01 | 100.0% | 61.5% |
| None | — | 0.54 | 46.0 | 2.91e-01 | 100.0% | 48.6% | |
| 6701 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.54 | 43.0 | 3.55e-01 | 100.0% | 75.0% |
| 5000618 | 1085.1.1.1 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 › DHH_CID | 0.52 | 44.0 | 3.56e-01 | 100.0% | 75.8% |