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portal_protein

Euk-Vir

Elephant_endotheliotropic_herpesvirus_4

portal_protein__YP_009179341__Elephant_endotheliotropic_herpesvirus_4__548914

Identity

Accession:: YP_009179341 ↗
Protein ID:: portal_protein
Kingdom:: euk

Quality

67.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Proboscivirus› Elephant_endotheliotropic_herpesvirus_4

TaxID: 548914

Cluster

View cluster (76 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-52_202-252_473-487

PDB

Domain cluster: rep: capsid_portal_protein__YP_007969771__Elephantid_betaherpesvirus_1__146015__D20-46_218-259_441-461

D2 medium residues 53-201_531-563

PDB

Domain cluster: rep: capsid_portal_protein__YP_081550__Human_betaherpesvirus_5__10359__D90-194_601-636

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01763.23 best	Herpes_UL6	69.9	2.20e-19	95.0%	29.1%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2b48A00	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.65	28.0	3.11e-01	75.8%	49.7%
3teqB00	1.10.287.3550	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.54	29.0	3.88e-01	79.7%	94.1%
2gbbB00	1.20.59.10	Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase	0.53	32.0	3.48e-01	76.9%	69.7%
2dq0A01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.52	26.0	3.30e-01	74.7%	78.5%
5kbwB00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.51	37.0	3.90e-01	97.3%	80.7%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5058570	1075.1.2.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX	0.63	42.0	4.70e-01	99.5%	87.9%
3401215	5059.1.1.3 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT	0.59	31.0	2.61e-01	92.3%	28.4%
3185726	558.1.1.0 ↗	alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain	0.56	31.0	2.12e-01	87.9%	15.3%
5045401	1075.4.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold	0.56	40.0	3.54e-01	74.2%	93.3%
3281514	1075.1.2.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX	0.53	42.0	4.12e-01	100.0%	76.9%
3592341	3877.1.1.0 ↗	alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC	0.53	37.0	3.33e-01	90.7%	53.3%
4992416	1079.1.1.0 ↗	alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA	0.52	47.0	4.44e-01	96.7%	82.8%
4982375	1079.1.1.0 ↗	alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA	0.52	45.0	4.35e-01	98.9%	82.0%
3179886	1079.1.1.12 ↗	alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › GDT1	0.52	39.0	4.03e-01	97.3%	81.7%
4287267	3236.2.1.8 ↗	alpha complex topology › Cation-proton antiporter › Sodium-dependent citrate symporter › Sodium-dependent citrate symporter › Asp-Al_Ex	0.51	39.0	3.06e-01	78.0%	85.9%
1146718	164.1.1.1 ↗	alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2	0.51	33.0	3.45e-01	75.3%	69.3%
3787685	3755.3.1.298 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › ING	0.50	34.0	3.77e-01	81.3%	84.8%

D3 medium residues 253-335_430-472

PDB