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pre-coat_protein
Euk-VirTomato_leaf_curl_Cebu_virus
pre-coat_protein__YP_001718618__Tomato_leaf_curl_Cebu_virus__507474
Identity
- Accession:
- YP_001718618 ↗
- Protein ID:
- pre-coat_protein
- Kingdom:
- euk
Quality
78.1
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Repensiviricetes›
Geplafuvirales›
Geminiviridae›
Begomovirus›
Tomato_leaf_curl_Cebu_virus
TaxID: 507474
Cluster
View cluster (245 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 32-96
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01524.23 best | Gemini_V2 | 59.7 | 3.70e-16 | 72.3% | 60.3% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fd4A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.68 | 50.0 | 3.48e-01 | 78.5% | 34.0% |
| 3h7lB02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.62 | 54.0 | 3.23e-01 | 100.0% | 82.2% |
| 1sy7A02 | 1.20.1370.20 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Catalase, four-helical domain | 0.60 | 41.0 | 4.14e-01 | 70.8% | 100.0% |
| 1u89A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.59 | 51.0 | 3.92e-01 | 92.3% | 77.0% |
| 3zssA02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.57 | 45.0 | 4.27e-01 | 86.2% | 87.3% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.56 | 48.0 | 3.93e-01 | 96.9% | 94.4% |
| 4fb2A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.53 | 43.0 | 2.75e-01 | 93.8% | 92.6% |
| 4ktwA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 46.0 | 3.50e-01 | 100.0% | 94.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3566226 | 196.1.1.1 ↗ | alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS | 0.79 | 54.0 | 4.29e-01 | 70.8% | 54.4% |
| 3998000 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.71 | 48.0 | 3.69e-01 | 70.8% | 32.7% |
| 4605697 | 516.1.1.1 ↗ | alpha arrays › YgfY-like (DUP399, Pfam03937) › YgfY-like (DUP399, Pfam03937) › YgfY-like (DUP399, Pfam03937) › Sdh5 | 0.63 | 45.0 | 4.20e-01 | 92.3% | 58.8% |
| 3785339 | 3294.1.1.1 ↗ | alpha complex topology › FAS type I helical domain › FAS type I helical domain › FAS type I helical domain › FAS_I_H | 0.60 | 42.0 | 2.68e-01 | 73.8% | 23.1% |
| 3934560 | 6123.1.1.0 ↗ | alpha bundles › Fluorescence recovery protein › Fluorescence recovery protein › Fluorescence recovery protein | 0.58 | 48.0 | 4.41e-01 | 95.4% | 81.1% |
| 4590767 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.56 | 49.0 | 3.00e-01 | 98.5% | 25.1% |
| 4026566 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.51 | 43.0 | 2.77e-01 | 95.4% | 48.3% |