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pre-terminal_protein

Euk-Vir

Psittacine_aviadenovirus_B

pre-terminal_protein__YP_009508601__Psittacine_aviadenovirus_B__2169709

Identity

Accession:: YP_009508601 ↗
Protein ID:: pre-terminal_protein
Kingdom:: euk

Quality

69.0 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Aviadenovirus› Psittacine_aviadenovirus_B

TaxID: 2169709

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 38-127

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02459.21 best	Adeno_terminal	57.4	1.40e-15	43.3%	7.1%

D2 medium residues 128-207_479-646

PDB

Domain cluster: rep: DNA_terminal_protein_pTP__YP_005271183__bat_adenovirus_3__2758098__D124-193_404-566

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02459.21 best	Adeno_terminal	249.6	8.60e-74	68.5%	30.3%
PF02459.21	Adeno_terminal	110.0	1.70e-31	32.7%	14.6%

D3 medium residues 239-262_346-409_451-478

PDB

D4 medium residues 263-345

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02459.21 best	Adeno_terminal	33.1	3.40e-08	95.2%	8.6%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3di5A00	1.20.120.450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain	0.60	52.0	4.36e-01	100.0%	79.2%
2p1aB01	1.20.120.450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain	0.59	52.0	4.37e-01	100.0%	84.2%
3dkaB01	1.20.120.450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain	0.59	52.0	4.48e-01	100.0%	87.4%
2oqmB01	1.20.120.450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain	0.59	51.0	4.12e-01	100.0%	80.5%
3t0yA01	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.57	30.0	3.34e-01	100.0%	62.1%
2f22A00	1.20.120.450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain	0.57	50.0	4.24e-01	100.0%	78.2%
5tk8A00	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.55	38.0	3.02e-01	88.0%	31.4%
2uxwA01	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.53	44.0	3.52e-01	95.2%	68.3%
3hzsA00	1.10.3810.10	Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like	0.53	45.0	3.51e-01	100.0%	81.3%
1a22A00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.50	40.0	3.25e-01	90.4%	58.3%
3fnrA01	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.50	42.0	3.60e-01	97.6%	82.8%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3031021	620.1.1.1 ↗	alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DUF664	0.60	53.0	4.25e-01	100.0%	84.1%
168725	620.1.1.2 ↗	alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB	0.55	49.0	4.14e-01	100.0%	79.0%
None	—		0.54	44.0	3.53e-01	92.8%	73.9%
4442857	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.53	44.0	3.39e-01	92.8%	84.1%