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pre1_saliva_scaffold_1_prodigal-single.1__X__X__00127

Bact-Vir

pre1_saliva_scaffold_1_prodigal-single.1__X__X__00127

Identity

Kingdom:
phage

Quality

58.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 600-860
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ux6A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.77 59.0 6.62e-01 98.5% 98.1%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.76 42.0 5.58e-01 84.7% 96.6%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.74 42.0 5.49e-01 100.0% 96.0%
7qryB01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.74 44.0 5.72e-01 99.2% 100.0%
3hbkA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.73 58.0 6.16e-01 100.0% 91.3%
1w0nA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.72 34.0 4.92e-01 100.0% 96.7%
3tojA01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.71 47.0 5.74e-01 100.0% 100.0%
2uwaA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.71 54.0 5.29e-01 100.0% 73.0%
1umzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 52.0 5.20e-01 100.0% 73.8%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.69 37.0 4.97e-01 100.0% 93.2%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.69 46.0 5.54e-01 100.0% 97.7%
4xw3A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.69 46.0 5.39e-01 100.0% 92.1%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.69 53.0 5.84e-01 100.0% 96.3%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.69 41.0 5.19e-01 100.0% 97.4%
5l73A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 40.0 4.94e-01 100.0% 87.9%
6r3mA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.66 41.0 5.04e-01 100.0% 94.6%
4gwmA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 39.0 4.94e-01 100.0% 93.9%
1st8A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.66 46.0 5.41e-01 100.0% 97.4%
2yc2A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.65 34.0 4.66e-01 100.0% 97.7%
5z6pA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.65 42.0 4.99e-01 100.0% 93.8%
4zxeC00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 34.0 4.53e-01 100.0% 95.6%
1jhjA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 35.0 4.40e-01 100.0% 85.7%
2xbzA00 2.60.40.2380 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 33.0 4.45e-01 98.5% 95.5%
5xnrA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 32.0 4.50e-01 100.0% 98.4%
2zzjA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 53.0 5.52e-01 100.0% 93.7%
6kcvA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 54.0 5.71e-01 100.0% 98.3%
2e26A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 37.0 4.65e-01 100.0% 94.8%
1oh4A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 39.0 4.70e-01 100.0% 92.0%
1uwwB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 40.0 4.76e-01 100.0% 92.7%
4awdB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 57.0 5.53e-01 100.0% 88.7%
2jdaB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 33.0 4.32e-01 99.6% 94.4%
2zxqA04 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 35.0 4.33e-01 100.0% 96.9%
3lbeB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 28.0 3.96e-01 91.2% 100.0%
2dslA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 26.0 3.76e-01 85.8% 100.0%
1c8uA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 25.0 3.62e-01 77.0% 95.7%
2ov9C01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 30.0 3.87e-01 90.8% 94.6%
2qwzA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 29.0 3.89e-01 92.0% 100.0%
1c8uA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 32.0 4.06e-01 92.0% 98.7%
3lw3B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 28.0 3.74e-01 90.4% 94.2%
2fs2B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 29.0 3.83e-01 93.1% 98.6%
1sbkA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 28.0 3.70e-01 89.3% 94.9%
4ybvA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 26.0 3.68e-01 87.4% 100.0%
4k02A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 27.0 3.73e-01 86.2% 100.0%
3d6xB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 29.0 3.88e-01 93.1% 100.0%
3s4kA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 26.0 3.65e-01 87.4% 98.4%
1q4tA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 29.0 3.80e-01 91.2% 97.9%
2pimA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 27.0 3.71e-01 91.2% 97.7%
3f1tB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 27.0 3.69e-01 92.0% 97.1%
2ws9300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 32.0 3.43e-01 100.0% 72.6%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3190424 10.1.1.49 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_59_C 0.82 55.0 6.62e-01 100.0% 97.2%
4361685 10.1.1.21 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.80 53.0 6.48e-01 99.6% 98.9%
3906069 10.1.1.20 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TSP_C 0.77 61.0 6.61e-01 100.0% 94.6%
3892955 10.1.1.20 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TSP_C 0.77 62.0 6.38e-01 100.0% 86.9%
5012226 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.77 55.0 6.37e-01 100.0% 98.9%
3862692 10.1.1.8 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.76 47.0 5.74e-01 99.6% 91.4%
3822766 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.75 44.0 5.49e-01 100.0% 92.5%
4243201 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.74 48.0 5.64e-01 100.0% 90.8%
3310516 10.1.1.11 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.73 52.0 5.78e-01 100.0% 89.5%
5004195 10.1.1.64 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF2341 0.72 55.0 5.43e-01 100.0% 73.8%
3607499 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.72 37.0 5.10e-01 76.2% 94.2%
3261490 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.71 51.0 5.87e-01 100.0% 95.5%
3297836 10.1.1.12 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16,XET_C 0.71 54.0 5.33e-01 100.0% 74.1%
3530956 10.1.1.8 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.71 48.0 5.41e-01 100.0% 87.5%
3659345 10.1.1.12 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16,XET_C 0.71 54.0 5.08e-01 100.0% 65.9%
3794863 10.1.1.8 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.71 48.0 5.28e-01 100.0% 83.7%
3968310 10.32.1.8 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.71 39.0 5.23e-01 100.0% 97.9%
3822249 10.1.1.12 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16,XET_C 0.71 53.0 5.20e-01 100.0% 71.0%
3328172 10.1.1.12 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16,XET_C 0.70 52.0 5.10e-01 100.0% 70.4%
337395 10.32.1.8 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.69 37.0 4.97e-01 100.0% 93.2%
3627225 10.1.1.8 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.69 48.0 5.12e-01 100.0% 80.0%
4108911 10.32.1.74 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Cry1Ac_dom-VII 0.69 36.0 4.79e-01 100.0% 92.9%
2324014 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.68 42.0 4.98e-01 83.1% 85.6%
3992749 10.1.1.8 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.68 47.0 4.84e-01 99.6% 72.2%
395586 10.1.1.11 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.68 53.0 5.80e-01 100.0% 97.2%
3250629 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.68 24.0 3.82e-01 73.2% 80.0%
3626905 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.68 40.0 4.83e-01 100.0% 86.3%
3482808 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.67 39.0 5.03e-01 100.0% 97.3%
4102071 10.32.1.8 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.67 38.0 4.93e-01 100.0% 96.0%
4032561 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.67 54.0 5.74e-01 100.0% 94.8%
3386406 10.32.1.89 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ape1_N 0.66 33.0 4.62e-01 100.0% 93.3%
5041180 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 32.0 4.38e-01 98.5% 90.0%
3607773 10.1.1.56 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.66 48.0 5.05e-01 100.0% 81.7%
3487927 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 35.0 4.48e-01 100.0% 91.3%
3223862 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.63 42.0 4.71e-01 82.4% 84.4%
3927637 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.63 42.0 4.72e-01 82.0% 85.5%
4002730 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.63 41.0 4.69e-01 81.2% 85.5%
3700235 10.32.1.11 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › ANAPC10 0.62 34.0 4.26e-01 100.0% 87.7%
3269104 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 29.0 4.12e-01 100.0% 94.4%
4466001 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 30.0 4.17e-01 70.5% 94.8%
3718839 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 31.0 4.19e-01 98.5% 98.5%
3240316 10.32.1.180 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CEP104_N 0.55 33.0 4.22e-01 100.0% 100.0%
3661138 511.1.1.1 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 0.55 29.0 3.78e-01 74.7% 91.4%
5057317 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 30.0 3.98e-01 97.7% 97.2%
1273080 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.54 23.0 2.98e-01 93.5% 66.7%
5041590 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 22.0 3.31e-01 100.0% 91.4%
3903463 10.32.1.163 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Laminin_N 0.52 40.0 4.28e-01 100.0% 93.6%
4054411 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.50 28.0 3.56e-01 81.2% 93.1%
D2 medium residues 104-244
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nlcA01 3.30.70.2700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 24.0 3.22e-01 83.7% 61.8%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3430448 10.1.1.11 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.69 43.0 4.54e-01 89.4% 68.5%
3830168 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 41.0 4.01e-01 89.4% 64.7%
None 0.50 37.0 2.95e-01 77.3% 61.1%
D3 medium residues 359-488
PDB
D4 medium residues 489-553
PDB
D5 medium residues 554-599_863-919
PDB