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pre1_saliva_scaffold_3_prodigal-single.1__X__X__00026
Bact-Virpre1_saliva_scaffold_3_prodigal-single.1__X__X__00026
Identity
- Kingdom:
- phage
Quality
88.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-103
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wbmA03 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.85 | 40.0 | 4.83e-01 | 97.1% | 67.1% |
| 3n79A01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.83 | 41.0 | 4.73e-01 | 97.1% | 64.1% |
| 2ewhA01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.82 | 42.0 | 4.57e-01 | 97.1% | 60.0% |
| 1q5yC00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.74 | 41.0 | 4.54e-01 | 99.0% | 67.1% |
| 1jw3A00 | 3.55.10.10 | Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain | 0.70 | 43.0 | 3.82e-01 | 98.0% | 44.3% |
| 3d3bJ00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.70 | 42.0 | 4.53e-01 | 99.0% | 70.1% |
| 1ro5A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.69 | 34.0 | 2.73e-01 | 100.0% | 25.1% |
| 1kzfA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.69 | 35.0 | 2.78e-01 | 100.0% | 25.3% |
| 4evuB00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.65 | 36.0 | 4.25e-01 | 97.1% | 80.9% |
| 3nlcA01 | 3.30.70.2700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 36.0 | 4.13e-01 | 96.1% | 77.6% |
| 2bbeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 38.0 | 3.81e-01 | 99.0% | 60.2% |
| 4bfiB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 34.0 | 3.57e-01 | 100.0% | 58.9% |
| 5lf5A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 36.0 | 3.72e-01 | 100.0% | 62.4% |
| 2e7vA01 | 3.30.70.960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain | 0.58 | 42.0 | 4.20e-01 | 100.0% | 73.3% |
| 4oi3A00 | 3.30.70.3090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer | 0.57 | 33.0 | 3.59e-01 | 95.1% | 69.1% |
| 2yweA04 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 42.0 | 4.05e-01 | 100.0% | 70.2% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 29.0 | 3.21e-01 | 88.2% | 63.2% |
| 5wl1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 37.0 | 3.77e-01 | 89.2% | 72.3% |
| 3e3xA02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 42.0 | 4.45e-01 | 99.0% | 91.5% |
| 4q97A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.72e-01 | 89.2% | 70.4% |
| 2fbjH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 35.0 | 4.03e-01 | 89.2% | 98.6% |
| 5h5zA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 34.0 | 3.64e-01 | 87.3% | 77.3% |
| 4jvuA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 37.0 | 3.69e-01 | 88.2% | 70.9% |
| 6z9cA01 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.52 | 32.0 | 3.09e-01 | 100.0% | 51.6% |
| 3pv7A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 34.0 | 3.51e-01 | 86.3% | 72.3% |
| 1cqkA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.59e-01 | 88.2% | 72.3% |
| 1ao7B00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.55e-01 | 88.2% | 72.0% |
| 6a2bB00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 34.0 | 3.60e-01 | 87.3% | 75.5% |
| 2aneH00 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.51 | 36.0 | 3.54e-01 | 97.1% | 68.8% |
| 2bc4A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 34.0 | 3.42e-01 | 88.2% | 67.0% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5061510 | 304.54.1.1 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › BMC | 0.85 | 43.0 | 4.45e-01 | 97.1% | 53.7% |
| 5064952 | 328.5.1.0 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like | 0.81 | 39.0 | 4.56e-01 | 96.1% | 64.0% |
| 3958644 | 256.1.1.2 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › DUF5703 | 0.79 | 42.0 | 5.16e-01 | 97.1% | 81.5% |
| 4597889 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.73 | 44.0 | 4.57e-01 | 99.0% | 64.2% |
| 4966477 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.72 | 40.0 | 4.18e-01 | 100.0% | 58.9% |
| 4965095 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.72 | 41.0 | 4.41e-01 | 100.0% | 65.2% |
| 4507345 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.69 | 41.0 | 4.57e-01 | 100.0% | 75.0% |
| 4008174 | 872.4.1.1 ↗ | a+b two layers › Dodecin subunit-like › YdgH-like › YdgH-like › YdgH_BhsA-like | 0.68 | 38.0 | 4.03e-01 | 97.1% | 62.2% |
| 3941853 | 872.4.1.1 ↗ | a+b two layers › Dodecin subunit-like › YdgH-like › YdgH-like › YdgH_BhsA-like | 0.67 | 37.0 | 3.94e-01 | 96.1% | 61.1% |
| 5049188 | 872.5.1.1 ↗ | a+b two layers › Dodecin subunit-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain › OAM_dimer | 0.67 | 39.0 | 4.35e-01 | 100.0% | 73.8% |
| 3223732 | 2003.1.5.42 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 | 0.66 | 38.0 | 3.13e-01 | 98.0% | 30.5% |
| 4979660 | 256.1.1.1 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease | 0.63 | 39.0 | 4.27e-01 | 98.0% | 75.3% |
| 3903805 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.63 | 35.0 | 3.84e-01 | 100.0% | 65.9% |
| 4941686 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.62 | 35.0 | 4.05e-01 | 95.1% | 78.6% |
| 3838844 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.62 | 38.0 | 3.99e-01 | 100.0% | 67.0% |
| 3591566 | 304.31.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase | 0.61 | 41.0 | 4.21e-01 | 100.0% | 70.0% |
| 3703269 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 42.0 | 4.00e-01 | 100.0% | 61.7% |
| 4554400 | 304.10.1.1 ↗ | a+b two layers › Alpha-beta plaits › RuBisCO, large subunit, small (N-terminal) domain › RuBisCO, large subunit, small (N-terminal) domain › RuBisCO_large_N | 0.61 | 42.0 | 4.34e-01 | 98.0% | 75.8% |
| 3813583 | 387.1.5.7 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL | 0.59 | 36.0 | 4.36e-01 | 100.0% | 95.4% |
| 4074419 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.58 | 43.0 | 4.65e-01 | 99.0% | 87.8% |
| 3704078 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.58 | 43.0 | 4.64e-01 | 100.0% | 87.8% |
| 3559614 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.58 | 42.0 | 3.74e-01 | 100.0% | 53.8% |
| 3970832 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.57 | 43.0 | 4.60e-01 | 100.0% | 87.8% |
| 5035799 | 304.57.1.1 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 | 0.56 | 40.0 | 3.73e-01 | 100.0% | 61.3% |
| 4532867 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.55 | 38.0 | 3.51e-01 | 89.2% | 55.4% |
| 3500435 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.53 | 43.0 | 4.66e-01 | 100.0% | 96.7% |
| 4353523 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.53 | 37.0 | 3.78e-01 | 88.2% | 74.0% |
| 3959732 | 10.39.1.0 ↗ | beta sandwiches › jelly-roll › Soluble domain of MmpS4 › Soluble domain of MmpS4 | 0.52 | 27.0 | 2.88e-01 | 96.1% | 52.9% |
| 3905772 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.52 | 36.0 | 3.63e-01 | 88.2% | 72.0% |
| 1503409 | 220.3.1.1 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop | 0.52 | 36.0 | 3.34e-01 | 100.0% | 55.3% |
| 4948673 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.52 | 30.0 | 3.73e-01 | 100.0% | 100.0% |
| 4882655 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.51 | 37.0 | 3.71e-01 | 88.2% | 75.0% |
| 4951925 | 321.1.1.1 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Gln-synt_C | 0.51 | 40.0 | 2.87e-01 | 91.2% | 65.9% |
| 5031797 | 321.1.1.1 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Gln-synt_C | 0.50 | 39.0 | 2.83e-01 | 88.2% | 62.2% |