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pre1_saliva_scaffold_4_prodigal-single.1__X__X__00023
Bact-Virpre1_saliva_scaffold_4_prodigal-single.1__X__X__00023
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 58-233
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05838.18 best | Glyco_hydro_108 | 69.7 | 3.40e-19 | 47.2% | 98.8% |
| PF09374.16 | PG_binding_3 | 31.6 | 2.10e-07 | 42.0% | 77.6% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ikbC00 | 1.20.141.10 | Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 | 0.82 | 71.0 | 7.38e-01 | 99.4% | 98.1% |
| 6v3zA00 | 1.20.141.10 | Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 | 0.77 | 68.0 | 6.80e-01 | 93.8% | 99.4% |
| 2nr7A00 | 1.20.141.10 | Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 | 0.74 | 69.0 | 6.67e-01 | 97.7% | 99.5% |
| 4c5fA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.72 | 61.0 | 6.27e-01 | 98.9% | 92.3% |
| 6cfcA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.70 | 53.0 | 5.58e-01 | 99.4% | 85.7% |
| 4hjzA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.70 | 59.0 | 5.84e-01 | 98.9% | 85.2% |
| 1q6aA00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.61 | 28.0 | 3.53e-01 | 93.2% | 69.2% |
| 1xl3C00 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.57 | 25.0 | 3.32e-01 | 85.2% | 73.6% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.54 | 25.0 | 3.56e-01 | 91.5% | 94.9% |
| 3ajmB02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.54 | 30.0 | 3.44e-01 | 99.4% | 71.4% |
| 1i7dA02 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.52 | 30.0 | 3.05e-01 | 89.2% | 52.8% |
| 3hd6A00 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.51 | 47.0 | 3.58e-01 | 99.4% | 74.4% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2756454 | 235.1.1.13 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_108,PG_binding_3 | 0.88 | 81.0 | 8.18e-01 | 100.0% | 96.0% |
| 5081640 | 235.1.1.45 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_108 | 0.83 | 78.0 | 7.78e-01 | 98.3% | 100.0% |
| 7430 | 235.1.1.13 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_108,PG_binding_3 | 0.81 | 70.0 | 7.33e-01 | 99.4% | 98.2% |
| 2774002 | 235.1.1.13 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_108,PG_binding_3 | 0.81 | 72.0 | 7.01e-01 | 94.3% | 92.7% |
| 7431 | 235.1.1.13 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_108,PG_binding_3 | 0.73 | 69.0 | 6.69e-01 | 98.9% | 100.0% |
| 3971115 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.72 | 57.0 | 5.80e-01 | 98.9% | 84.7% |
| 3944103 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.70 | 55.0 | 5.52e-01 | 99.4% | 80.6% |
| 3601285 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.55 | 50.0 | 3.24e-01 | 100.0% | 91.0% |
| 5061992 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.51 | 41.0 | 4.18e-01 | 100.0% | 86.3% |
| 3688932 | 563.2.1.0 ↗ | alpha bundles › ATPD N-terminal domain-like › Cas Cmr5-like › Cas Cmr5-like | 0.51 | 29.0 | 3.34e-01 | 81.2% | 74.6% |