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pre1_saliva_scaffold_4_prodigal-single.1__X__X__00047
Bact-Virpre1_saliva_scaffold_4_prodigal-single.1__X__X__00047
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-186
Domain cluster:
rep: MT889387.1__QOP66146.1__SEA_DANIELLEIGNACE_5__00005__D28-163
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05866.17 best | RusA | 28.5 | 2.70e-06 | 76.2% | 93.5% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q8rA00 | 3.30.1330.70 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Holliday junction resolvase RusA | 0.84 | 53.0 | 6.61e-01 | 82.3% | 98.3% |
| 1w5eB02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.70 | 36.0 | 4.65e-01 | 80.7% | 84.9% |
| 2r75102 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.69 | 35.0 | 4.43e-01 | 81.8% | 80.9% |
| 5hy0A01 | 3.30.1330.170 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Cyanuric acid hydrolase/Barbiturase, RU A | 0.67 | 38.0 | 4.78e-01 | 84.5% | 91.7% |
| 4nq3A01 | 3.30.1330.170 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Cyanuric acid hydrolase/Barbiturase, RU A | 0.67 | 36.0 | 4.70e-01 | 87.3% | 95.9% |
| 4dplA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.62 | 37.0 | 3.74e-01 | 76.8% | 57.1% |
| 5l16A01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.61 | 39.0 | 4.62e-01 | 90.6% | 93.5% |
| 1vknA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.61 | 36.0 | 3.77e-01 | 98.3% | 62.4% |
| 1qu9A00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.61 | 39.0 | 4.55e-01 | 93.9% | 91.3% |
| 3k12D00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.61 | 37.0 | 4.37e-01 | 92.8% | 89.2% |
| 3gtzA00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.61 | 37.0 | 4.43e-01 | 92.8% | 93.0% |
| 3rycB02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.60 | 38.0 | 4.61e-01 | 87.3% | 98.2% |
| 3lmeC00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.60 | 38.0 | 4.40e-01 | 93.4% | 89.8% |
| 2ozpA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.59 | 34.0 | 3.53e-01 | 77.3% | 58.7% |
| 2btoB02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.59 | 34.0 | 4.38e-01 | 80.7% | 98.1% |
| 3i3fB00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.59 | 38.0 | 4.39e-01 | 93.9% | 90.6% |
| 1yawB01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.55 | 37.0 | 4.24e-01 | 93.9% | 91.0% |
| 2rb9A01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.55 | 35.0 | 3.83e-01 | 86.7% | 78.5% |
| 3foeA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.53 | 15.0 | 2.37e-01 | 90.6% | 53.6% |
| 4ei0A01 | 2.60.40.3550 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 | 0.52 | 31.0 | 3.47e-01 | 99.4% | 73.0% |
| 1mgpA02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.52 | 34.0 | 4.14e-01 | 89.5% | 99.2% |
| 3vpaB00 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.52 | 41.0 | 3.51e-01 | 97.8% | 52.5% |
| 2iu4A02 | 3.30.1180.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 | 0.52 | 36.0 | 3.96e-01 | 80.7% | 85.4% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5061637 | 301.4.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA | 0.85 | 64.0 | 7.17e-01 | 81.8% | 96.6% |
| 4156345 | 301.4.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA | 0.84 | 54.0 | 6.64e-01 | 89.0% | 97.5% |
| 3982309 | 301.4.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA | 0.84 | 53.0 | 6.54e-01 | 81.8% | 95.8% |
| 318712 | 301.4.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA | 0.84 | 54.0 | 6.58e-01 | 82.3% | 96.7% |
| 5032184 | 301.4.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA | 0.80 | 48.0 | 6.15e-01 | 81.8% | 99.1% |
| 4955735 | 301.6.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like | 0.71 | 38.0 | 4.58e-01 | 87.3% | 76.7% |
| 4955744 | 301.6.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › FtsZ_C | 0.71 | 38.0 | 4.65e-01 | 87.8% | 80.0% |
| 4558877 | 301.6.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like | 0.70 | 43.0 | 5.04e-01 | 88.4% | 84.6% |
| 4980498 | 301.6.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like | 0.70 | 39.0 | 4.92e-01 | 87.8% | 89.1% |
| 4955739 | 301.6.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like | 0.69 | 38.0 | 4.49e-01 | 86.7% | 76.8% |
| 5038314 | 301.6.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › FtsZ_C | 0.69 | 39.0 | 4.55e-01 | 88.4% | 78.4% |
| 4983100 | 301.6.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › FtsZ_C | 0.68 | 38.0 | 4.64e-01 | 87.3% | 84.3% |
| 4987759 | 301.6.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like | 0.67 | 40.0 | 4.14e-01 | 84.0% | 61.1% |
| 4928819 | 301.6.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like | 0.66 | 36.0 | 4.57e-01 | 87.3% | 90.5% |
| 3672045 | 301.6.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › FtsZ_C | 0.65 | 38.0 | 4.11e-01 | 86.7% | 66.7% |
| 4405473 | 301.6.1.3 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › CetZ_C | 0.65 | 37.0 | 4.09e-01 | 87.3% | 67.3% |
| 4024433 | 301.6.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C | 0.62 | 39.0 | 3.91e-01 | 86.7% | 60.5% |
| 3387251 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.60 | 36.0 | 4.35e-01 | 90.6% | 89.2% |
| 4947580 | 301.6.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like | 0.60 | 38.0 | 3.87e-01 | 88.4% | 63.3% |
| 3599896 | 301.6.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like | 0.59 | 39.0 | 3.84e-01 | 88.4% | 62.1% |
| 136276 | 301.7.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › Ribonuc_L-PSP | 0.59 | 38.0 | 4.34e-01 | 93.9% | 88.5% |
| 2093824 | 301.6.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C | 0.59 | 38.0 | 3.81e-01 | 86.7% | 62.2% |
| 3872905 | 301.6.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C | 0.58 | 38.0 | 3.79e-01 | 86.7% | 62.7% |
| 3615521 | 301.6.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C | 0.58 | 40.0 | 3.87e-01 | 88.4% | 63.0% |
| 3623829 | 301.6.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C | 0.58 | 37.0 | 3.69e-01 | 88.4% | 60.5% |
| 4882440 | 301.6.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C | 0.57 | 37.0 | 3.79e-01 | 86.7% | 65.5% |
| 3516645 | 301.6.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C | 0.57 | 38.0 | 3.58e-01 | 86.7% | 54.9% |
| 4882436 | 301.6.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C | 0.57 | 37.0 | 3.80e-01 | 86.7% | 66.7% |
| 4961816 | 301.6.1.3 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › CetZ_C | 0.57 | 39.0 | 3.85e-01 | 87.3% | 65.8% |
| 3595355 | 301.6.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like | 0.56 | 39.0 | 3.82e-01 | 86.7% | 64.6% |
| 3488068 | 301.6.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C | 0.55 | 37.0 | 3.62e-01 | 88.4% | 61.0% |
| 4188078 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.53 | 25.0 | 3.03e-01 | 96.7% | 66.1% |
| 3797622 | 301.13.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain | 0.52 | 37.0 | 4.04e-01 | 89.5% | 87.3% |
| 3599849 | 2485.4.1.0 ↗ | a+b three layers › Thioredoxin-like › Fumarate hydratase N-terminal domain › Fumarate hydratase N-terminal domain | 0.52 | 37.0 | 4.21e-01 | 88.4% | 100.0% |
| 4100507 | 2003.1.6.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like | 0.52 | 38.0 | 3.02e-01 | 93.9% | 37.7% |
| None | — | 0.50 | 36.0 | 2.93e-01 | 94.5% | 37.7% |
D2
high
residues 193-284
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ibdA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.70 | 59.0 | 5.10e-01 | 93.5% | 74.1% |
| 3d7iB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.67 | 51.0 | 5.02e-01 | 96.7% | 75.5% |
| 3bniB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.66 | 58.0 | 4.73e-01 | 96.7% | 80.1% |
| 3on2A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.66 | 58.0 | 4.57e-01 | 96.7% | 77.4% |
| 1j09A05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.64 | 40.0 | 3.96e-01 | 83.7% | 59.2% |
| 2genA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 55.0 | 4.39e-01 | 96.7% | 84.0% |
| 2fji101 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.63 | 55.0 | 4.24e-01 | 97.8% | 65.1% |
| 2np3A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 55.0 | 4.77e-01 | 100.0% | 85.2% |
| 2g7gA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 51.0 | 4.06e-01 | 96.7% | 66.5% |
| 6t0bc02 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.60 | 42.0 | 3.34e-01 | 72.8% | 91.6% |
| 3s63A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.59 | 40.0 | 4.11e-01 | 72.8% | 71.6% |
| 2w9zA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 41.0 | 3.64e-01 | 70.7% | 90.2% |
| 6f7hA00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.59 | 50.0 | 3.70e-01 | 94.6% | 64.9% |
| 3k66A01 | 1.20.120.770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain | 0.58 | 50.0 | 3.93e-01 | 100.0% | 95.7% |
| 2dg7A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 49.0 | 4.04e-01 | 100.0% | 83.3% |
| 1fx8A00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.56 | 48.0 | 3.57e-01 | 96.7% | 66.1% |
| 5aioA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 37.0 | 3.17e-01 | 100.0% | 41.3% |
| 1dd5A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.55 | 41.0 | 3.93e-01 | 80.4% | 89.9% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.55 | 39.0 | 4.25e-01 | 80.4% | 90.9% |
| 1a17A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 38.0 | 3.20e-01 | 97.8% | 41.5% |
| 1t72A01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.54 | 42.0 | 3.87e-01 | 82.6% | 81.2% |
| 6wk3A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 44.0 | 3.86e-01 | 93.5% | 62.8% |
| 8hi7B01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.53 | 48.0 | 3.38e-01 | 100.0% | 44.2% |
| 1nfvA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 39.0 | 3.27e-01 | 80.4% | 77.5% |
| 3e6sA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 41.0 | 3.45e-01 | 84.8% | 96.9% |
| 7dwqL01 | 1.20.1240.10 | Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI | 0.51 | 37.0 | 3.45e-01 | 78.3% | 84.8% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.51 | 37.0 | 4.06e-01 | 82.6% | 94.7% |
| 7cjsB01 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.51 | 42.0 | 3.25e-01 | 90.2% | 78.9% |
| 1ihgA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 38.0 | 3.40e-01 | 82.6% | 56.6% |
| 1nzeA00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.51 | 39.0 | 3.74e-01 | 83.7% | 77.7% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.50 | 38.0 | 3.69e-01 | 81.5% | 89.2% |
| 2fo7A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.50 | 40.0 | 3.61e-01 | 90.2% | 70.6% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4403090 | 191.1.1.50 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › SlmA-like_C | 0.70 | 60.0 | 5.11e-01 | 93.5% | 73.8% |
| 4612523 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.69 | 59.0 | 4.68e-01 | 93.5% | 58.9% |
| 4958894 | 604.39.1.20 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › TrpP | 0.66 | 56.0 | 4.55e-01 | 96.7% | 48.3% |
| 4599957 | 101.8.1.0 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases | 0.66 | 42.0 | 3.51e-01 | 84.8% | 36.4% |
| 4433574 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.65 | 57.0 | 4.38e-01 | 96.7% | 69.5% |
| 3411261 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 44.0 | 3.47e-01 | 70.7% | 46.7% |
| 3594304 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.62 | 51.0 | 3.79e-01 | 92.4% | 91.0% |
| 5014274 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.61 | 52.0 | 4.10e-01 | 95.7% | 64.5% |
| 4930039 | 1075.1.1.12 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › CcmB | 0.60 | 49.0 | 3.81e-01 | 92.4% | 69.5% |
| 3270139 | 109.4.1.27 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › W2 | 0.59 | 52.0 | 4.43e-01 | 98.9% | 84.7% |
| 3601214 | 5048.1.1.0 ↗ | alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like | 0.57 | 49.0 | 3.70e-01 | 96.7% | 62.6% |
| 3824988 | 109.3.1.339 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Vps35 | 0.56 | 47.0 | 3.96e-01 | 98.9% | 51.4% |
| 3770410 | 109.4.1.465 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SPO22 | 0.56 | 49.0 | 4.25e-01 | 100.0% | 67.3% |
| 3381517 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.56 | 46.0 | 4.26e-01 | 93.5% | 97.5% |
| 3760145 | 106.1.1.8 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like | 0.56 | 46.0 | 3.98e-01 | 93.5% | 64.0% |
| 4985507 | 604.10.1.0 ↗ | alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac | 0.55 | 40.0 | 4.06e-01 | 77.2% | 93.3% |
| 4980458 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 38.0 | 2.88e-01 | 98.9% | 27.9% |
| 3940779 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 42.0 | 4.04e-01 | 81.5% | 92.4% |
| 3715315 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.55 | 45.0 | 3.44e-01 | 97.8% | 60.8% |
| 4974861 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.54 | 44.0 | 3.31e-01 | 93.5% | 60.0% |
| 4974860 | 1075.5.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt | 0.54 | 39.0 | 3.16e-01 | 78.3% | 71.8% |
| 3517146 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 42.0 | 3.39e-01 | 91.3% | 40.5% |
| 5005528 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.52 | 40.0 | 3.90e-01 | 81.5% | 93.0% |
| 4803706 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.52 | 46.0 | 3.81e-01 | 98.9% | 74.9% |
| 3728345 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.52 | 44.0 | 2.86e-01 | 100.0% | 30.7% |
| 4255504 | 109.4.1.200 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_14 | 0.52 | 37.0 | 3.59e-01 | 89.1% | 65.7% |
| 4946444 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.51 | 42.0 | 3.08e-01 | 92.4% | 85.1% |
| 3283447 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.51 | 41.0 | 3.26e-01 | 89.1% | 85.0% |
| 3498895 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.51 | 39.0 | 3.38e-01 | 82.6% | 61.4% |
| 3965779 | 5073.1.2.0 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain | 0.51 | 35.0 | 2.55e-01 | 71.7% | 60.8% |
| 3912101 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.51 | 39.0 | 3.85e-01 | 83.7% | 88.0% |
| 3208120 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.50 | 39.0 | 3.27e-01 | 82.6% | 62.6% |