←Back to structures
pre1_saliva_scaffold_4_prodigal-single.1__X__X__00048
Bact-Virpre1_saliva_scaffold_4_prodigal-single.1__X__X__00048
Identity
- Kingdom:
- phage
Quality
79.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-67_131-143
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lpnA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.63 | 47.0 | 4.27e-01 | 80.3% | 67.6% |
| 2of5H00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.59 | 41.0 | 3.80e-01 | 73.7% | 98.0% |
| 1grlB01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.59 | 44.0 | 3.17e-01 | 82.9% | 91.8% |
| 2l3nA00 | 1.10.1050.20 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › | 0.57 | 41.0 | 3.75e-01 | 77.6% | 89.4% |
| 5d91A02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.56 | 42.0 | 3.11e-01 | 80.3% | 35.9% |
| 1v66A00 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.56 | 42.0 | 4.43e-01 | 81.6% | 98.5% |
| 4boqA00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.53 | 40.0 | 3.14e-01 | 82.9% | 43.4% |
| 2jucA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.53 | 36.0 | 4.01e-01 | 78.9% | 100.0% |
| 1fkwA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.52 | 40.0 | 2.70e-01 | 86.8% | 82.5% |
| 5ow2A00 | 1.10.10.930 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 35.0 | 3.59e-01 | 82.9% | 72.6% |
| 2yviA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.51 | 37.0 | 3.64e-01 | 81.6% | 95.5% |
| 3ezqA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.50 | 39.0 | 3.45e-01 | 85.5% | 95.7% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3592477 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.63 | 44.0 | 4.85e-01 | 72.4% | 98.3% |
| 3479898 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.59 | 45.0 | 4.73e-01 | 82.9% | 90.0% |
| 3736506 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.57 | 42.0 | 3.09e-01 | 78.9% | 33.0% |
| 4015729 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.56 | 39.0 | 3.39e-01 | 73.7% | 100.0% |
| 3131 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.56 | 42.0 | 4.43e-01 | 81.6% | 98.5% |
| 5047093 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.55 | 41.0 | 3.07e-01 | 80.3% | 35.9% |
| 4121822 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.54 | 32.0 | 3.76e-01 | 71.1% | 90.0% |
| 4109098 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.54 | 37.0 | 3.51e-01 | 86.8% | 58.5% |
| 3393892 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.53 | 40.0 | 4.18e-01 | 82.9% | 90.0% |
| 3794285 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.53 | 41.0 | 4.19e-01 | 85.5% | 88.0% |
| 4959135 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 47.0 | 3.36e-01 | 100.0% | 68.6% |
| 3741023 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 43.0 | 3.08e-01 | 93.4% | 97.6% |
| 3197455 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.52 | 38.0 | 3.98e-01 | 80.3% | 97.1% |
| 4485727 | 5050.1.1.12 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › TRI12 | 0.51 | 42.0 | 2.91e-01 | 94.7% | 82.1% |
| 3506177 | 148.1.3.263 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF30376 | 0.51 | 37.0 | 3.59e-01 | 100.0% | 70.6% |
D2
medium
residues 68-130
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ouwB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.55 | 48.0 | 3.73e-01 | 96.8% | 52.2% |
| 3ltjA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.53 | 38.0 | 2.87e-01 | 81.0% | 82.7% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4174963 | 7011.1.1.0 ↗ | alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain | 0.71 | 49.0 | 2.99e-01 | 73.0% | 50.8% |
| 3781836 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.66 | 55.0 | 3.29e-01 | 100.0% | 22.2% |