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pre1_saliva_scaffold_4_prodigal-single.1__X__X__00076

Bact-Vir

pre1_saliva_scaffold_4_prodigal-single.1__X__X__00076

Identity

Kingdom:
phage

Quality

73.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 48-108
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fp1B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.63 47.0 3.56e-01 85.2% 36.6%
1hr7C02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.50 42.0 2.93e-01 100.0% 40.0%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3727415 11.1.4.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Dioxygenase_C,Dioxygenase_N 0.73 49.0 3.13e-01 77.0% 14.6%
3698312 11.1.4.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Dioxygenase_C,Dioxygenase_N 0.71 51.0 3.24e-01 82.0% 15.3%
3816625 605.3.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Nonstructural protein ns2, Nep, M1-binding domain › Nonstructural protein ns2, Nep, M1-binding domain 0.70 47.0 4.40e-01 70.5% 61.3%
3595946 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.67 46.0 4.55e-01 73.8% 67.7%
3507551 192.5.1.0 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.65 46.0 4.00e-01 75.4% 61.1%
4016151 2003.1.3.9 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FMO-like 0.60 43.0 2.78e-01 77.0% 48.8%
3244254 101.1.8.23 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF4473 0.53 38.0 3.51e-01 72.1% 55.0%