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pre1_saliva_scaffold_4_prodigal-single.1__X__X__00087
Bact-Virpre1_saliva_scaffold_4_prodigal-single.1__X__X__00087
Identity
- Kingdom:
- phage
Quality
76.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-29
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p13A00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.67 | 51.0 | 3.89e-01 | 100.0% | 40.0% |
| 2oaiA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.64 | 47.0 | 3.73e-01 | 100.0% | 42.5% |
| 2nqwA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.61 | 46.0 | 3.54e-01 | 100.0% | 40.2% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 40.0 | 3.09e-01 | 96.6% | 30.3% |
| 3prbA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.60 | 44.0 | 4.05e-01 | 89.7% | 63.6% |
| 5teqA01 | 3.30.470.110 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › | 0.57 | 41.0 | 2.61e-01 | 93.1% | 18.0% |
| 2wt9A00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.54 | 38.0 | 2.41e-01 | 75.9% | 10.6% |
| 2b81C00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.53 | 36.0 | 2.21e-01 | 100.0% | 16.6% |
| 8inhA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.53 | 37.0 | 2.24e-01 | 75.9% | 9.2% |
| 1chkA01 | 1.20.141.10 | Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 | 0.53 | 38.0 | 2.61e-01 | 89.7% | 88.1% |
| 1np6A02 | 2.20.25.120 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.51 | 36.0 | 3.68e-01 | 86.2% | 92.6% |
| 1biqA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.51 | 36.0 | 2.11e-01 | 82.8% | 6.5% |
| 3w6kC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 32.0 | 2.78e-01 | 100.0% | 74.7% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 37.0 | 3.23e-01 | 100.0% | 84.6% |
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 38.0 | 3.18e-01 | 89.7% | 41.7% |
| 3ot2A00 | 3.90.1570.10 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A | 0.50 | 37.0 | 2.41e-01 | 96.6% | 50.8% |
| 4cbvA02 | 2.40.50.1020 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain | 0.50 | 36.0 | 2.62e-01 | 100.0% | 38.1% |
| 6hxiA01 | 3.30.470.110 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › | 0.50 | 34.0 | 2.25e-01 | 89.7% | 17.6% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4505937 | 513.1.1.1 ↗ | a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 | 0.70 | 52.0 | 4.00e-01 | 100.0% | 85.9% |
| 4088241 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.69 | 51.0 | 4.03e-01 | 96.6% | 36.0% |
| 4991373 | 2003.1.5.46 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS | 0.67 | 52.0 | 3.18e-01 | 96.6% | 28.4% |
| 4392935 | 513.1.1.1 ↗ | a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 | 0.67 | 49.0 | 3.81e-01 | 100.0% | 84.7% |
| 3606350 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.65 | 48.0 | 3.73e-01 | 96.6% | 33.3% |
| 4959996 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.65 | 46.0 | 4.11e-01 | 86.2% | 52.0% |
| 5042402 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.64 | 49.0 | 4.16e-01 | 100.0% | 71.7% |
| 4961832 | 217.2.1.1 ↗ | a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC | 0.62 | 47.0 | 3.66e-01 | 100.0% | 45.0% |
| 5058276 | 284.4.1.1 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF | 0.61 | 45.0 | 4.24e-01 | 89.7% | 70.0% |
| 4950806 | 4.6.1.8 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › WH_Lhr | 0.60 | 46.0 | 4.05e-01 | 100.0% | 74.5% |
| 5015989 | 239.1.1.7 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH | 0.60 | 46.0 | 3.99e-01 | 100.0% | 74.5% |
| 4964644 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.60 | 45.0 | 4.00e-01 | 100.0% | 76.4% |
| 4968661 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.59 | 43.0 | 3.98e-01 | 89.7% | 75.6% |
| 4956032 | 239.1.1.7 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH | 0.59 | 46.0 | 3.93e-01 | 100.0% | 68.3% |
| 3387904 | 217.2.1.1 ↗ | a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC | 0.59 | 45.0 | 3.53e-01 | 100.0% | 43.8% |
| 5038181 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.59 | 44.0 | 2.56e-01 | 96.6% | 8.5% |
| 5015084 | 239.1.1.7 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH | 0.58 | 42.0 | 3.71e-01 | 100.0% | 71.7% |
| 4181293 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.57 | 40.0 | 3.04e-01 | 96.6% | 30.9% |
| 3474675 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.57 | 39.0 | 2.31e-01 | 82.8% | 23.8% |
| 4933883 | 284.4.1.1 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF | 0.57 | 41.0 | 3.68e-01 | 89.7% | 56.0% |
| 4954114 | 4203.1.1.0 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like | 0.56 | 44.0 | 3.68e-01 | 93.1% | 58.3% |
| 5047208 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.56 | 40.0 | 3.55e-01 | 93.1% | 49.1% |
| 4995054 | 284.4.1.1 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF | 0.56 | 40.0 | 3.89e-01 | 93.1% | 67.5% |
| 3176559 | 924.1.1.0 ↗ | few secondary structure elements › Zinc domain conserved in yeast copper-regulated transcription factors › Zinc domain conserved in yeast copper-regulated transcription factors › Zinc domain conserved in yeast copper-regulated transcription factors | 0.55 | 43.0 | 3.54e-01 | 93.1% | 44.6% |
| 3578203 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.54 | 38.0 | 2.49e-01 | 75.9% | 46.0% |
| 3368213 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.54 | 37.0 | 2.38e-01 | 96.6% | 21.7% |
| 3706619 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.53 | 38.0 | 2.64e-01 | 72.4% | 42.3% |
| 3973685 | 602.1.1.0 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like | 0.53 | 35.0 | 2.04e-01 | 96.6% | 5.9% |
| 3711355 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 38.0 | 3.32e-01 | 86.2% | 89.1% |
| 3947085 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.51 | 37.0 | 3.10e-01 | 100.0% | 45.7% |
| 3838672 | 304.28.2.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB TolC docking domain › ACR_tran | 0.51 | 33.0 | 2.72e-01 | 89.7% | 74.4% |
| 4503469 | 3351.1.1.0 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 | 0.50 | 33.0 | 2.66e-01 | 100.0% | 36.2% |
| 3814497 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.50 | 37.0 | 2.47e-01 | 100.0% | 22.3% |
| 4408503 | 192.2.1.43 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › TraD_N | 0.50 | 41.0 | 2.77e-01 | 93.1% | 30.4% |
| 5028692 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.50 | 37.0 | 3.14e-01 | 100.0% | 49.2% |