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pre1_saliva_scaffold_4_prodigal-single.1__X__X__00095

Bact-Vir

pre1_saliva_scaffold_4_prodigal-single.1__X__X__00095

Identity

Kingdom:
phage

Quality

51.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-140
PDB
Domain cluster: rep: MN850594.1__QHR68771.1__flopper_29__00029__D7-107
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.72 31.0 4.73e-01 79.9% 95.0%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 38.0 3.89e-01 85.1% 57.0%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 39.0 3.94e-01 84.3% 58.6%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 40.0 3.94e-01 89.6% 57.4%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 35.0 4.45e-01 90.3% 94.7%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 31.0 3.90e-01 90.3% 79.0%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.61 30.0 3.02e-01 79.9% 45.7%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 37.0 3.69e-01 93.3% 60.0%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 37.0 3.79e-01 93.3% 65.6%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.58 43.0 4.63e-01 97.0% 91.2%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.55 39.0 3.90e-01 92.5% 69.5%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 39.0 3.72e-01 97.0% 63.8%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 40.0 3.24e-01 94.8% 40.5%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 34.0 3.55e-01 97.0% 67.7%
1a2vA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.51 46.0 3.22e-01 99.3% 85.2%
1cc1L00 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.50 42.0 2.95e-01 94.0% 83.6%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3967853 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.85 57.0 6.13e-01 100.0% 78.3%
3974671 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.81 51.0 6.33e-01 97.8% 100.0%
3230371 3180.1.1.0 ↗ a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.80 33.0 3.65e-01 85.8% 48.2%
4221174 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.78 52.0 6.21e-01 97.0% 95.8%
3236870 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.76 32.0 3.31e-01 85.8% 41.5%
2581425 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.72 30.0 4.57e-01 86.6% 94.5%
3990496 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.72 31.0 4.26e-01 82.1% 78.6%
5014685 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 33.0 4.60e-01 90.3% 98.5%
4963006 4.1.1.490 ↗ beta barrels › SH3 › SH3 › SH3 › PF26269 0.65 36.0 4.40e-01 90.3% 84.7%
4945471 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 29.0 4.05e-01 91.8% 87.7%
4010689 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.60 39.0 4.49e-01 91.0% 88.0%
1066273 331.3.1.12 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like 0.60 37.0 3.69e-01 93.3% 60.0%
3288440 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.58 38.0 3.75e-01 93.3% 61.4%
3743289 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.57 35.0 3.83e-01 100.0% 75.2%
3894031 330.1.1.6 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C 0.57 31.0 3.73e-01 76.9% 81.2%
4195832 9.1.1.24 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.54 35.0 3.58e-01 91.8% 66.9%
3690594 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 40.0 2.65e-01 97.0% 19.4%
4032029 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 35.0 4.04e-01 89.6% 91.6%
3259314 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.53 32.0 3.63e-01 92.5% 79.0%
2538921 5.1.2.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.52 41.0 3.17e-01 93.3% 38.2%
D2 medium residues 172-256
PDB
D3 medium residues 257-366
PDB