←Back to structures
pre1_saliva_scaffold_4_prodigal-single.1__X__X__00101
Bact-Virpre1_saliva_scaffold_4_prodigal-single.1__X__X__00101
Identity
- Kingdom:
- phage
Quality
64.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-66
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6kwzA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.62 | 55.0 | 4.76e-01 | 100.0% | 95.9% |
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.60 | 41.0 | 4.48e-01 | 71.4% | 100.0% |
| 2egcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 42.0 | 4.05e-01 | 76.2% | 82.7% |
| 1cfyA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.59 | 50.0 | 3.98e-01 | 96.8% | 81.2% |
| 4ccjA01 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.59 | 49.0 | 3.33e-01 | 93.7% | 65.9% |
| 2o18A00 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.57 | 45.0 | 2.97e-01 | 88.9% | 19.2% |
| 2kt2A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 40.0 | 3.93e-01 | 74.6% | 100.0% |
| 1bdyA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.56 | 48.0 | 3.94e-01 | 100.0% | 73.2% |
| 3ufiA02 | 2.60.40.2630 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 48.0 | 3.91e-01 | 100.0% | 72.0% |
| 5c17A00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.56 | 47.0 | 3.37e-01 | 98.4% | 30.6% |
| 3m9zA00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.55 | 41.0 | 3.43e-01 | 84.1% | 82.3% |
| 1fm0E00 | 3.90.1170.40 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit | 0.54 | 43.0 | 3.41e-01 | 90.5% | 66.9% |
| 2o1uB01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.54 | 38.0 | 2.94e-01 | 77.8% | 63.0% |
| 1atiB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.54 | 43.0 | 3.65e-01 | 92.1% | 75.0% |
| 4wjmA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.53 | 42.0 | 2.75e-01 | 90.5% | 26.0% |
| 2hzmA02 | 2.20.140.20 | Mainly Beta › Single Sheet › q64v53_bacfr protein fold › | 0.53 | 37.0 | 3.41e-01 | 74.6% | 100.0% |
| 4obmA00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.53 | 40.0 | 2.78e-01 | 87.3% | 49.2% |
| 3rbtD01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 37.0 | 3.14e-01 | 79.4% | 71.2% |
| 2x1wO01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.65e-01 | 87.3% | 61.1% |
| 2xotA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 41.0 | 3.76e-01 | 88.9% | 68.6% |
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.51 | 36.0 | 3.74e-01 | 76.2% | 90.0% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 36.0 | 3.43e-01 | 74.6% | 78.9% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.51 | 36.0 | 3.64e-01 | 76.2% | 96.8% |
| 1wjmA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 41.0 | 3.49e-01 | 98.4% | 85.4% |
| 3licA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 39.0 | 2.97e-01 | 90.5% | 43.3% |
| 2yzjA01 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.50 | 44.0 | 3.43e-01 | 100.0% | 72.9% |
| 4v02C00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.50 | 38.0 | 3.18e-01 | 85.7% | 83.6% |
| 1y7xA01 | 2.30.30.550 | Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat | 0.50 | 34.0 | 3.78e-01 | 73.0% | 100.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031645 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.79 | 55.0 | 5.97e-01 | 73.0% | 100.0% |
| 5033467 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.66 | 44.0 | 4.86e-01 | 71.4% | 97.9% |
| 3927982 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 51.0 | 4.45e-01 | 84.1% | 65.3% |
| 3295690 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.62 | 50.0 | 4.97e-01 | 100.0% | 86.2% |
| 3232139 | 642.1.1.2 ↗ | a+b three layers › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › SARA_C | 0.62 | 55.0 | 3.68e-01 | 100.0% | 42.5% |
| 3939821 | 10.12.1.40 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 | 0.61 | 51.0 | 3.20e-01 | 93.7% | 46.2% |
| 3584644 | 304.9.1.59 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › CEBP_ZZ | 0.60 | 38.0 | 3.18e-01 | 79.4% | 35.5% |
| 5068408 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.60 | 41.0 | 4.49e-01 | 74.6% | 100.0% |
| 5009 | 4076.3.1.2 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › YqbF | 0.60 | 41.0 | 4.44e-01 | 73.0% | 95.9% |
| 4254079 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.60 | 46.0 | 4.67e-01 | 88.9% | 90.0% |
| 1692156 | 10.12.1.40 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 | 0.59 | 50.0 | 3.15e-01 | 93.7% | 48.9% |
| 4267139 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 44.0 | 4.64e-01 | 88.9% | 89.5% |
| 3491852 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.59 | 50.0 | 4.03e-01 | 100.0% | 80.0% |
| 3855045 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.58 | 47.0 | 4.84e-01 | 96.8% | 95.0% |
| 4956454 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.58 | 40.0 | 4.28e-01 | 73.0% | 83.6% |
| 3597164 | 10.12.1.40 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 | 0.58 | 48.0 | 3.03e-01 | 93.7% | 47.5% |
| 3264069 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.58 | 49.0 | 5.04e-01 | 100.0% | 100.0% |
| 4538232 | 7575.1.1.0 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like | 0.58 | 49.0 | 3.36e-01 | 100.0% | 46.5% |
| 4112122 | 386.1.1.81 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF1391 | 0.57 | 32.0 | 3.71e-01 | 100.0% | 82.5% |
| 5079258 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.56 | 32.0 | 3.54e-01 | 100.0% | 73.3% |
| 5009847 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 35.0 | 3.85e-01 | 100.0% | 84.4% |
| 4007827 | 386.1.1.81 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF1391 | 0.56 | 32.0 | 3.67e-01 | 100.0% | 82.5% |
| 5018724 | 872.3.1.0 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like | 0.56 | 33.0 | 2.98e-01 | 100.0% | 37.9% |
| 5030173 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 44.0 | 4.12e-01 | 88.9% | 68.8% |
| 3236725 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.55 | 39.0 | 2.73e-01 | 79.4% | 58.5% |
| 4087422 | 275.1.1.0 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | 0.55 | 38.0 | 3.69e-01 | 77.8% | 62.7% |
| 4950808 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.54 | 45.0 | 3.13e-01 | 95.2% | 33.3% |
| 4184275 | 10.12.1.40 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 | 0.53 | 37.0 | 2.47e-01 | 76.2% | 20.7% |
| 3967950 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 31.0 | 3.45e-01 | 100.0% | 77.8% |
| 3480647 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.53 | 40.0 | 3.46e-01 | 85.7% | 54.3% |
| 3512612 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.52 | 42.0 | 3.57e-01 | 88.9% | 64.8% |
| 4408923 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 41.0 | 3.10e-01 | 88.9% | 52.9% |
| 2390534 | 2002.1.1.139 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › BKACE | 0.51 | 39.0 | 2.67e-01 | 88.9% | 91.8% |
| 3522202 | 11.1.1.589 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NUP210_Ig | 0.51 | 40.0 | 2.97e-01 | 93.7% | 76.5% |
| 3411379 | 11.1.1.536 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 | 0.51 | 39.0 | 2.98e-01 | 87.3% | 68.3% |
| 5059406 | 220.1.1.291 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_4 | 0.50 | 32.0 | 3.04e-01 | 93.7% | 54.7% |