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pre1_saliva_scaffold_4_prodigal-single.1__X__X__00108
Bact-Virpre1_saliva_scaffold_4_prodigal-single.1__X__X__00108
Identity
- Kingdom:
- phage
Quality
76.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 45-154_228-243
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nvmA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.51 | 37.0 | 4.05e-01 | 87.3% | 92.3% |
| 2e3nA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 38.0 | 3.19e-01 | 80.2% | 71.4% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.51 | 37.0 | 3.84e-01 | 96.0% | 80.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3735075 | 207.1.1.33 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › DUF6546 | 0.70 | 36.0 | 3.06e-01 | 87.3% | 32.0% |
| 3940409 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 42.0 | 2.85e-01 | 77.0% | 73.8% |
| 3756491 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 27.0 | 3.00e-01 | 96.0% | 54.3% |
| 4124613 | 2484.1.1.175 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N+FGGY_C | 0.55 | 41.0 | 2.85e-01 | 78.6% | 94.8% |
| 3589803 | 2484.1.1.144 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 | 0.55 | 42.0 | 4.65e-01 | 81.0% | 100.0% |
| 4978960 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.54 | 38.0 | 3.94e-01 | 72.2% | 100.0% |
| 4025734 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.53 | 43.0 | 3.56e-01 | 87.3% | 80.9% |
| 4096100 | 2484.1.1.176 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 | 0.52 | 40.0 | 2.76e-01 | 82.5% | 80.0% |
| 3507037 | 2484.1.1.176 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1+Hexokinase_2 | 0.52 | 40.0 | 2.78e-01 | 82.5% | 87.1% |
| 3987705 | 4178.1.1.0 ↗ | beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain | 0.52 | 36.0 | 4.06e-01 | 96.0% | 93.7% |
| 3960090 | 2484.1.1.216 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF7159 | 0.51 | 44.0 | 3.86e-01 | 96.8% | 74.4% |
D2
medium
residues 155-227
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1h54A03 | 2.60.420.10 | Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 | 0.69 | 41.0 | 4.15e-01 | 84.9% | 58.1% |
| 4g7xB00 | 3.30.1150.10 | Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › | 0.66 | 56.0 | 4.95e-01 | 90.4% | 100.0% |
| 2xa7M01 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.65 | 43.0 | 3.70e-01 | 91.8% | 41.7% |
| 4p6zM01 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.62 | 40.0 | 3.38e-01 | 87.7% | 38.8% |
| 3cueC00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.59 | 44.0 | 3.54e-01 | 95.9% | 40.6% |
| 1s7mA03 | 2.20.25.140 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.59 | 26.0 | 3.42e-01 | 75.3% | 92.9% |
| 2qa1A02 | 3.30.70.2450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 30.0 | 2.98e-01 | 75.3% | 41.8% |
| 2j3tC00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.58 | 43.0 | 3.49e-01 | 94.5% | 40.4% |
| 3n8hA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.58 | 42.0 | 4.22e-01 | 90.4% | 75.0% |
| 1vkdA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.58 | 46.0 | 3.03e-01 | 87.7% | 93.6% |
| 5llwA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 47.0 | 4.33e-01 | 90.4% | 69.6% |
| 3f1yA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.57 | 40.0 | 2.66e-01 | 75.3% | 21.1% |
| 2be3B01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.55 | 43.0 | 3.66e-01 | 90.4% | 100.0% |
| 2kheA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.55 | 44.0 | 4.20e-01 | 90.4% | 79.8% |
| 1dabA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.54 | 42.0 | 2.52e-01 | 84.9% | 15.2% |
| 3syjA02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.54 | 39.0 | 2.34e-01 | 80.8% | 13.0% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 36.0 | 2.69e-01 | 71.2% | 34.2% |
| 5aa5E00 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.53 | 45.0 | 2.75e-01 | 100.0% | 70.1% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 40.0 | 3.48e-01 | 83.6% | 72.5% |
| 2e55A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 44.0 | 3.30e-01 | 98.6% | 37.0% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.52 | 40.0 | 3.57e-01 | 86.3% | 77.0% |
| 1aqcB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 35.0 | 2.85e-01 | 90.4% | 41.0% |
| 7r7eA01 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.52 | 40.0 | 3.51e-01 | 87.7% | 84.0% |
| 5agvA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.50 | 38.0 | 3.28e-01 | 83.6% | 69.4% |
| 2vgnA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.50 | 38.0 | 3.24e-01 | 84.9% | 48.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3224321 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.71 | 35.0 | 4.64e-01 | 86.3% | 97.1% |
| 3573819 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.71 | 37.0 | 4.33e-01 | 89.0% | 73.5% |
| 3998976 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.66 | 37.0 | 4.38e-01 | 86.3% | 86.7% |
| 3513420 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.66 | 34.0 | 4.20e-01 | 84.9% | 87.5% |
| 4960195 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.66 | 49.0 | 4.93e-01 | 97.3% | 77.3% |
| 3938574 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.65 | 34.0 | 3.43e-01 | 87.7% | 48.0% |
| 3921237 | 391.1.2.13 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1-VW_OTOGL | 0.65 | 34.0 | 2.47e-01 | 80.8% | 18.0% |
| 3624010 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.64 | 33.0 | 3.86e-01 | 86.3% | 70.0% |
| 4523246 | 391.1.2.3 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC | 0.62 | 33.0 | 3.55e-01 | 80.8% | 56.9% |
| 3584990 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.62 | 33.0 | 3.87e-01 | 86.3% | 79.5% |
| 3236918 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.62 | 33.0 | 3.09e-01 | 83.6% | 38.9% |
| 4989913 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 40.0 | 2.77e-01 | 89.0% | 18.5% |
| 4003074 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.61 | 32.0 | 3.83e-01 | 86.3% | 81.4% |
| 3520957 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.60 | 32.0 | 4.00e-01 | 79.5% | 100.0% |
| 3690791 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.60 | 43.0 | 2.66e-01 | 76.7% | 31.4% |
| 3508739 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.58 | 44.0 | 3.36e-01 | 83.6% | 79.5% |
| 3501817 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.58 | 31.0 | 3.63e-01 | 79.5% | 77.8% |
| 3587125 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.57 | 48.0 | 3.87e-01 | 98.6% | 91.3% |
| 3590189 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.56 | 47.0 | 3.71e-01 | 95.9% | 84.4% |
| 3837990 | 3675.1.1.0 ↗ | a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain | 0.56 | 49.0 | 4.06e-01 | 97.3% | 86.2% |
| 3472961 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 39.0 | 3.20e-01 | 86.3% | 40.0% |
| None | — | 0.51 | 42.0 | 2.75e-01 | 93.2% | 78.0% | |
| 4251800 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.51 | 39.0 | 3.29e-01 | 83.6% | 66.2% |
| None | — | 0.51 | 42.0 | 2.76e-01 | 93.2% | 78.0% |