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pre1_saliva_scaffold_4_prodigal-single.1__X__X__00110
Bact-Virpre1_saliva_scaffold_4_prodigal-single.1__X__X__00110
Identity
- Kingdom:
- phage
Quality
89.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 123-186
Domain cluster:
representative
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4eqaC00 | 2.40.128.650 | Mainly Beta › Beta Barrel › Lipocalin › | 0.76 | 67.0 | 5.10e-01 | 100.0% | 50.7% |
| 6j9eJ00 | 3.30.160.560 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 54.0 | 5.37e-01 | 100.0% | 86.4% |
| 3hfqA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.66 | 56.0 | 3.58e-01 | 98.4% | 22.6% |
| 1ri6A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.66 | 54.0 | 3.50e-01 | 96.9% | 98.2% |
| 4agiA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.66 | 55.0 | 3.59e-01 | 98.4% | 27.1% |
| 3fgbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.65 | 55.0 | 3.51e-01 | 100.0% | 24.1% |
| 8djfA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.65 | 54.0 | 3.59e-01 | 96.9% | 28.8% |
| 2aujD03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.64 | 45.0 | 4.55e-01 | 73.4% | 85.5% |
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.64 | 50.0 | 4.93e-01 | 98.4% | 81.2% |
| 1rl1A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 46.0 | 4.11e-01 | 78.1% | 63.0% |
| 5xrkA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 53.0 | 4.22e-01 | 100.0% | 56.7% |
| 7apkF01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 51.0 | 3.33e-01 | 98.4% | 22.9% |
| 6hbzA01 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.62 | 46.0 | 3.92e-01 | 79.7% | 73.8% |
| 1hxnA00 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.60 | 49.0 | 3.55e-01 | 96.9% | 36.2% |
| 1n02A00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.59 | 49.0 | 4.27e-01 | 95.3% | 82.4% |
| 2yyzA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.58 | 39.0 | 4.06e-01 | 85.9% | 75.9% |
| 2re3B03 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.57 | 29.0 | 3.55e-01 | 79.7% | 93.3% |
| 3igfA02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 42.0 | 4.03e-01 | 79.7% | 71.6% |
| 3u12A00 | 2.30.29.180 | Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain | 0.56 | 50.0 | 4.26e-01 | 100.0% | 76.0% |
| 2xcmC00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 40.0 | 3.63e-01 | 78.1% | 62.0% |
| 4trtA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.56 | 41.0 | 3.43e-01 | 81.2% | 59.7% |
| 2cofA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 50.0 | 4.15e-01 | 100.0% | 67.3% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 36.0 | 4.00e-01 | 93.8% | 89.8% |
| 1ilyA00 | 3.30.420.100 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.55 | 47.0 | 4.22e-01 | 96.9% | 97.8% |
| 3nixB00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 39.0 | 2.51e-01 | 81.2% | 80.5% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.54 | 45.0 | 3.90e-01 | 100.0% | 59.2% |
| 1tqzA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 46.0 | 3.83e-01 | 100.0% | 78.9% |
| 4bdxA00 | 2.10.25.10 | Mainly Beta › Ribbon › Laminin › Laminin | 0.54 | 38.0 | 3.49e-01 | 73.4% | 62.7% |
| 1kutB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 37.0 | 3.32e-01 | 71.9% | 77.5% |
| 1wgvA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 40.0 | 3.38e-01 | 85.9% | 52.4% |
| 2oqbA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 47.0 | 3.97e-01 | 100.0% | 74.1% |
| 1vx7H01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.53 | 45.0 | 4.17e-01 | 100.0% | 83.5% |
| 5j3tA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 46.0 | 3.77e-01 | 100.0% | 62.7% |
| 5ejrA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 45.0 | 4.22e-01 | 100.0% | 77.5% |
| 2db2A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 42.0 | 3.74e-01 | 100.0% | 60.6% |
| 4emoC00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 46.0 | 3.80e-01 | 100.0% | 64.7% |
| 7q04F01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.52 | 41.0 | 3.55e-01 | 90.6% | 60.6% |
| 4o8uA00 | 3.30.420.440 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 | 0.52 | 44.0 | 3.03e-01 | 96.9% | 32.2% |
| 4omfB02 | 3.10.450.750 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 36.0 | 3.96e-01 | 73.4% | 100.0% |
| 4v19S00 | 3.30.420.80 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 | 0.51 | 44.0 | 3.47e-01 | 100.0% | 69.9% |
| 3cjeA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.51 | 38.0 | 3.12e-01 | 89.1% | 85.3% |
| 3a0oA03 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 40.0 | 2.75e-01 | 93.8% | 53.0% |
| 6hoxA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 44.0 | 3.04e-01 | 100.0% | 49.6% |
| 1gqyB02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.50 | 37.0 | 2.71e-01 | 98.4% | 24.9% |
| 1lomA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.50 | 35.0 | 3.10e-01 | 85.9% | 47.5% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 863938 | 328.5.1.3 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › Tsi1 | 0.76 | 67.0 | 5.10e-01 | 100.0% | 50.7% |
| 3966449 | 328.5.1.0 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like | 0.75 | 65.0 | 5.04e-01 | 96.9% | 52.9% |
| 3703426 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.74 | 65.0 | 4.15e-01 | 98.4% | 21.0% |
| 3789072 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.70 | 59.0 | 3.64e-01 | 93.8% | 26.8% |
| 4030728 | 5.1.4.661 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st | 0.68 | 56.0 | 3.50e-01 | 93.8% | 24.4% |
| 3302412 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.68 | 51.0 | 3.28e-01 | 100.0% | 17.3% |
| 3642082 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.67 | 53.0 | 3.48e-01 | 95.3% | 19.0% |
| 3659226 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.67 | 54.0 | 3.76e-01 | 92.2% | 36.5% |
| 3883146 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.67 | 35.0 | 4.01e-01 | 70.3% | 68.9% |
| 3715600 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.67 | 57.0 | 3.43e-01 | 98.4% | 15.0% |
| 3844573 | 5.1.3.170 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_IFT140_2nd | 0.66 | 54.0 | 3.46e-01 | 93.8% | 17.1% |
| 3421489 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.66 | 55.0 | 3.66e-01 | 98.4% | 28.3% |
| 5022781 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.65 | 53.0 | 3.40e-01 | 93.8% | 20.6% |
| 4495021 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.65 | 49.0 | 3.02e-01 | 79.7% | 86.8% |
| 4946341 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.65 | 55.0 | 3.76e-01 | 98.4% | 27.3% |
| 3468128 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.64 | 53.0 | 3.43e-01 | 98.4% | 19.1% |
| 1141859 | 5.1.10.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › DUF6849 | 0.64 | 50.0 | 4.88e-01 | 95.3% | 77.8% |
| 3812138 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.63 | 53.0 | 3.97e-01 | 98.4% | 42.3% |
| None | — | 0.63 | 51.0 | 4.05e-01 | 100.0% | 40.9% | |
| 4882253 | 5.1.4.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin_propel | 0.62 | 52.0 | 3.36e-01 | 98.4% | 18.9% |
| 5012768 | 5.1.10.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › DUF6849 | 0.62 | 47.0 | 4.74e-01 | 93.8% | 83.1% |
| 2576776 | 5.1.4.62 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN | 0.61 | 50.0 | 3.36e-01 | 98.4% | 21.1% |
| 4013267 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.59 | 49.0 | 3.27e-01 | 100.0% | 27.2% |
| 4637164 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.59 | 45.0 | 3.52e-01 | 84.4% | 68.3% |
| 4965906 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 50.0 | 4.18e-01 | 96.9% | 57.3% |
| 4408024 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.58 | 43.0 | 4.45e-01 | 82.8% | 85.0% |
| 3644584 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.58 | 41.0 | 3.31e-01 | 78.1% | 41.4% |
| 4986345 | 319.1.1.23 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 | 0.57 | 42.0 | 3.84e-01 | 78.1% | 63.5% |
| 4095799 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 45.0 | 2.99e-01 | 96.9% | 20.4% |
| 5010537 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.57 | 40.0 | 3.82e-01 | 76.6% | 72.2% |
| 3216714 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 32.0 | 3.83e-01 | 71.9% | 100.0% |
| 3520837 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 47.0 | 3.74e-01 | 93.8% | 49.6% |
| 3940847 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.57 | 31.0 | 2.65e-01 | 89.1% | 29.1% |
| 3629974 | 220.1.1.52 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C | 0.56 | 43.0 | 3.80e-01 | 85.9% | 68.0% |
| 3617706 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 50.0 | 4.29e-01 | 100.0% | 84.0% |
| 3996551 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 43.0 | 3.93e-01 | 85.9% | 75.6% |
| 3480327 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.56 | 49.0 | 3.95e-01 | 100.0% | 78.4% |
| 3892091 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 40.0 | 2.95e-01 | 78.1% | 30.5% |
| 3257304 | 220.1.1.2 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 | 0.55 | 48.0 | 4.14e-01 | 100.0% | 73.3% |
| 953 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.55 | 50.0 | 4.32e-01 | 100.0% | 75.8% |
| 3991064 | 319.1.1.11 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › SGS | 0.54 | 38.0 | 3.09e-01 | 76.6% | 46.8% |
| 3642679 | 220.1.1.78 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 | 0.54 | 48.0 | 4.07e-01 | 100.0% | 75.0% |
| 3696868 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.54 | 38.0 | 3.26e-01 | 78.1% | 50.8% |
| 4432262 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.54 | 41.0 | 3.45e-01 | 85.9% | 53.3% |
| 3934964 | 2484.1.1.6 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N | 0.53 | 45.0 | 3.09e-01 | 96.9% | 91.2% |
| 3924597 | 330.16.1.0 ↗ | a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain | 0.53 | 39.0 | 3.88e-01 | 98.4% | 77.1% |
| 3265885 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.53 | 37.0 | 3.01e-01 | 76.6% | 91.4% |
| 3614247 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 45.0 | 3.70e-01 | 100.0% | 75.2% |
| 4391061 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.52 | 35.0 | 2.88e-01 | 93.8% | 37.5% |
| 3967128 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.51 | 35.0 | 3.41e-01 | 95.3% | 64.3% |
| 3970503 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.51 | 36.0 | 2.90e-01 | 93.8% | 36.4% |
| 3390648 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 42.0 | 3.49e-01 | 93.8% | 55.0% |
| 4497740 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.51 | 37.0 | 3.83e-01 | 79.7% | 85.0% |
| 3687350 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 34.0 | 3.59e-01 | 82.8% | 83.6% |
| 4457771 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.51 | 34.0 | 3.31e-01 | 71.9% | 70.7% |
| 4027383 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.50 | 39.0 | 2.48e-01 | 87.5% | 90.5% |
| 3869436 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 42.0 | 3.76e-01 | 100.0% | 69.0% |