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pre1_saliva_scaffold_4_prodigal-single.1__X__X__00113
Bact-Virpre1_saliva_scaffold_4_prodigal-single.1__X__X__00113
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-84
D2
high
residues 92-172
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k54A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.73 | 49.0 | 4.15e-01 | 74.1% | 44.7% |
| 2i9wA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 48.0 | 3.70e-01 | 75.3% | 53.4% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.65 | 33.0 | 3.33e-01 | 75.3% | 47.5% |
| 3ub1D02 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 44.0 | 3.93e-01 | 75.3% | 70.2% |
| 3dmcA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 43.0 | 3.62e-01 | 72.8% | 72.4% |
| 2ia7A00 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 39.0 | 3.51e-01 | 71.6% | 47.7% |
| 4ec6A00 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 43.0 | 3.92e-01 | 75.3% | 78.9% |
| 3ulpD00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 54.0 | 4.83e-01 | 100.0% | 88.5% |
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.60 | 30.0 | 3.69e-01 | 71.6% | 80.4% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 52.0 | 4.77e-01 | 100.0% | 83.6% |
| 1ut7B01 | 2.170.150.80 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain | 0.59 | 41.0 | 3.57e-01 | 72.8% | 50.4% |
| 4mypA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 40.0 | 3.55e-01 | 71.6% | 78.5% |
| 2hqlA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 52.0 | 5.04e-01 | 100.0% | 92.3% |
| 2lyxA00 | 3.10.450.390 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 | 0.58 | 43.0 | 4.22e-01 | 96.3% | 72.4% |
| 2cwaA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 52.0 | 4.69e-01 | 100.0% | 73.4% |
| 3en2A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 51.0 | 4.97e-01 | 100.0% | 92.3% |
| 3dm8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 41.0 | 3.44e-01 | 74.1% | 45.2% |
| 3g8zA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 41.0 | 3.46e-01 | 74.1% | 76.6% |
| 3fhwA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 51.0 | 4.80e-01 | 100.0% | 87.9% |
| 4lgvD02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.57 | 44.0 | 3.10e-01 | 84.0% | 61.5% |
| 3k8aB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 50.0 | 4.66e-01 | 100.0% | 85.4% |
| 3ef8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 40.0 | 3.30e-01 | 74.1% | 68.9% |
| 1xeuA02 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 39.0 | 3.90e-01 | 71.6% | 77.1% |
| 3hn3A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 38.0 | 3.52e-01 | 70.4% | 78.8% |
| 4kc3B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 38.0 | 3.62e-01 | 70.4% | 78.9% |
| 3hk4A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 41.0 | 3.64e-01 | 97.5% | 53.4% |
| 3fsdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 39.0 | 3.41e-01 | 74.1% | 82.6% |
| 2p0wA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 43.0 | 3.63e-01 | 85.2% | 82.0% |
| 5aj3Q00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 42.0 | 3.86e-01 | 85.2% | 73.4% |
| 2gtlO02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 49.0 | 3.84e-01 | 100.0% | 51.5% |
| 4inaA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 37.0 | 2.85e-01 | 71.6% | 97.0% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 46.0 | 3.67e-01 | 98.8% | 59.4% |
| 7pkwA01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 44.0 | 4.09e-01 | 98.8% | 71.8% |
| 1xksA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 42.0 | 2.68e-01 | 85.2% | 23.5% |
| 3b7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 46.0 | 4.05e-01 | 97.5% | 85.0% |
| 2g16B00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.52 | 44.0 | 3.55e-01 | 95.1% | 96.3% |
| 2d8bA01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.51 | 42.0 | 3.48e-01 | 88.9% | 79.3% |
| 1vqqA01 | 3.10.450.100 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 | 0.51 | 44.0 | 4.00e-01 | 96.3% | 88.1% |
| 5bkaE01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 44.0 | 3.76e-01 | 97.5% | 83.3% |
ECOD (72)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3412126 | 243.3.1.53 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › CHGN | 0.68 | 47.0 | 4.34e-01 | 71.6% | 58.0% |
| 4935679 | 3414.1.1.13 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 | 0.67 | 43.0 | 4.14e-01 | 71.6% | 58.9% |
| 4950394 | 3414.1.1.13 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 | 0.65 | 42.0 | 3.89e-01 | 70.4% | 51.4% |
| 4952885 | 3414.1.1.13 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 | 0.65 | 42.0 | 3.97e-01 | 70.4% | 55.8% |
| 4957407 | 3414.1.1.13 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 | 0.65 | 42.0 | 3.54e-01 | 71.6% | 40.8% |
| 5002447 | 3414.1.1.13 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 | 0.64 | 42.0 | 4.04e-01 | 71.6% | 57.9% |
| 3428834 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.63 | 51.0 | 3.47e-01 | 86.4% | 46.6% |
| 4626934 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 58.0 | 5.30e-01 | 100.0% | 88.6% |
| 3659467 | 243.1.1.45 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › S6PP_C | 0.63 | 44.0 | 3.83e-01 | 72.8% | 93.6% |
| 5014277 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.63 | 37.0 | 3.66e-01 | 96.3% | 55.3% |
| 3639738 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.63 | 46.0 | 5.00e-01 | 86.4% | 92.5% |
| 5021263 | 3414.1.1.13 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 | 0.63 | 42.0 | 3.59e-01 | 70.4% | 44.0% |
| 3827979 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.62 | 43.0 | 3.65e-01 | 72.8% | 53.2% |
| 3421524 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 43.0 | 2.72e-01 | 72.8% | 15.0% |
| 3669518 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.61 | 40.0 | 3.58e-01 | 70.4% | 47.8% |
| 3651043 | 243.3.1.47 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF7074 | 0.61 | 43.0 | 4.09e-01 | 74.1% | 63.2% |
| 3709133 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.61 | 48.0 | 4.24e-01 | 86.4% | 92.5% |
| 3315222 | 243.1.1.89 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF7074 | 0.60 | 43.0 | 4.00e-01 | 97.5% | 60.0% |
| 3253090 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.60 | 41.0 | 3.73e-01 | 97.5% | 52.7% |
| 3921426 | 264.2.1.1 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac | 0.59 | 51.0 | 4.33e-01 | 93.8% | 83.8% |
| 5005180 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.59 | 50.0 | 4.36e-01 | 93.8% | 89.6% |
| 3588663 | 9.4.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains | 0.59 | 44.0 | 4.18e-01 | 79.0% | 86.3% |
| 3967804 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.59 | 42.0 | 3.89e-01 | 75.3% | 68.6% |
| 4676601 | 243.1.1.1 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B | 0.58 | 41.0 | 3.29e-01 | 74.1% | 73.4% |
| 4283272 | 243.1.1.1 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B | 0.58 | 42.0 | 3.29e-01 | 75.3% | 72.4% |
| 164228 | 2.1.1.54 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3217 | 0.58 | 52.0 | 4.81e-01 | 100.0% | 80.8% |
| 5056431 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 40.0 | 3.49e-01 | 71.6% | 64.8% |
| 4122961 | 2.1.1.122 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 | 0.58 | 52.0 | 4.87e-01 | 100.0% | 92.0% |
| 4013325 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.57 | 48.0 | 4.14e-01 | 91.4% | 72.8% |
| 4625119 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.57 | 46.0 | 4.52e-01 | 100.0% | 79.8% |
| 3271321 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 41.0 | 3.41e-01 | 74.1% | 65.9% |
| 4865157 | 243.1.1.17 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC | 0.57 | 42.0 | 3.72e-01 | 98.8% | 54.3% |
| 3273514 | 243.1.1.36 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_5 | 0.57 | 40.0 | 3.44e-01 | 74.1% | 68.5% |
| 4024475 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.56 | 44.0 | 4.43e-01 | 82.7% | 95.0% |
| 4074364 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.56 | 46.0 | 3.96e-01 | 90.1% | 84.6% |
| 4233828 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.56 | 45.0 | 4.32e-01 | 100.0% | 74.7% |
| 4259027 | 9.3.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C | 0.56 | 49.0 | 4.32e-01 | 100.0% | 75.6% |
| 3808998 | 331.3.1.28 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 | 0.55 | 49.0 | 3.57e-01 | 95.1% | 71.2% |
| 3806226 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.55 | 41.0 | 3.34e-01 | 100.0% | 40.6% |
| 3931232 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 49.0 | 4.25e-01 | 98.8% | 64.0% |
| 3315173 | 243.3.1.46 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SWIM | 0.55 | 49.0 | 4.35e-01 | 100.0% | 68.7% |
| 4022153 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.55 | 47.0 | 3.85e-01 | 92.6% | 83.4% |
| 3352475 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.55 | 40.0 | 4.12e-01 | 92.6% | 82.7% |
| 3430247 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.55 | 42.0 | 3.86e-01 | 81.5% | 71.2% |
| 3435849 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.55 | 42.0 | 4.16e-01 | 98.8% | 77.3% |
| 4024062 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 41.0 | 4.29e-01 | 80.2% | 98.6% |
| 3188712 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.54 | 44.0 | 4.13e-01 | 93.8% | 71.0% |
| 3881440 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.53 | 44.0 | 3.85e-01 | 92.6% | 79.2% |
| 3738689 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.53 | 41.0 | 4.08e-01 | 84.0% | 89.4% |
| 4012953 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.53 | 45.0 | 3.65e-01 | 92.6% | 84.0% |
| 3675483 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 40.0 | 2.54e-01 | 97.5% | 16.2% |
| 3190995 | 4.8.1.22 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 | 0.53 | 44.0 | 3.47e-01 | 92.6% | 85.7% |
| 4600806 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.53 | 41.0 | 3.72e-01 | 84.0% | 70.0% |
| 3402269 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.52 | 41.0 | 3.72e-01 | 84.0% | 70.9% |
| 3736329 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.52 | 44.0 | 3.41e-01 | 92.6% | 80.0% |
| 3602503 | 264.2.1.1 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac | 0.52 | 43.0 | 3.85e-01 | 93.8% | 81.7% |
| 1555393 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.52 | 38.0 | 3.30e-01 | 77.8% | 58.5% |
| 4018672 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.52 | 44.0 | 3.93e-01 | 92.6% | 68.7% |
| 3593394 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 40.0 | 3.45e-01 | 82.7% | 59.2% |
| 4193401 | 243.1.1.34 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like | 0.52 | 46.0 | 4.14e-01 | 97.5% | 81.8% |
| 3214004 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.52 | 47.0 | 4.36e-01 | 98.8% | 83.0% |
| 3201221 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.52 | 46.0 | 4.26e-01 | 100.0% | 90.5% |
| 3939569 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.52 | 41.0 | 4.07e-01 | 100.0% | 82.4% |
| 5056633 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.52 | 46.0 | 3.58e-01 | 100.0% | 57.2% |
| 3782947 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.52 | 38.0 | 3.45e-01 | 97.5% | 55.0% |
| 3687369 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.51 | 43.0 | 4.02e-01 | 91.4% | 76.0% |
| 3393619 | 284.4.1.2 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › PF28923 | 0.51 | 31.0 | 3.62e-01 | 79.0% | 98.0% |
| 5028249 | 5090.1.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains | 0.51 | 45.0 | 4.04e-01 | 98.8% | 94.7% |
| 3723691 | 2003.1.2.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO | 0.51 | 46.0 | 2.95e-01 | 100.0% | 33.8% |
| 5067682 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 41.0 | 3.96e-01 | 98.8% | 80.0% |
| 3389979 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.50 | 41.0 | 3.60e-01 | 100.0% | 60.0% |
| 3969155 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.50 | 44.0 | 3.53e-01 | 96.3% | 71.6% |
D3
high
residues 216-314_332-375
Domain cluster:
rep: MK308677.1__QAX97080.1__X__00136__D628-665_685-770
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.67 | 26.0 | 3.15e-01 | 98.6% | 53.2% |
| 8igrI01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.64 | 59.0 | 5.52e-01 | 100.0% | 99.4% |
| 6ruiB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.60 | 44.0 | 4.67e-01 | 100.0% | 85.7% |
| 3u6yA00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.58 | 28.0 | 3.39e-01 | 100.0% | 68.7% |
| 7jrjK01 | 3.30.70.141 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain | 0.55 | 31.0 | 3.02e-01 | 99.3% | 50.0% |
| 2bkkA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 23.0 | 2.84e-01 | 97.2% | 60.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4654615 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.66 | 61.0 | 5.15e-01 | 100.0% | 98.3% |
| 4255464 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.65 | 60.0 | 5.00e-01 | 100.0% | 98.4% |
| 4366177 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.65 | 60.0 | 5.06e-01 | 100.0% | 98.3% |
| 4886404 | 4042.1.1.1 ↗ | a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6 | 0.64 | 59.0 | 5.06e-01 | 99.3% | 100.0% |
| 3980535 | 1.1.13.51 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU | 0.62 | 35.0 | 3.66e-01 | 100.0% | 57.8% |
| 3056924 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.60 | 55.0 | 4.58e-01 | 100.0% | 98.4% |
| 3786933 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.59 | 47.0 | 5.07e-01 | 100.0% | 96.8% |
| 4970832 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.59 | 47.0 | 5.00e-01 | 100.0% | 95.2% |
| 5082575 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.57 | 27.0 | 3.58e-01 | 99.3% | 81.2% |
| 3174542 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.54 | 35.0 | 3.63e-01 | 99.3% | 70.0% |
| 3695559 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.53 | 43.0 | 4.48e-01 | 100.0% | 94.6% |
D4
medium
residues 183-215_377-440_542-571
Domain cluster:
rep: PHAGE-A8--js4906-27-3_S30_scaffold_1_curated_closed_complete_prodigal-single.1__X__X__00064__D205-229_383-459
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00562.34 best | RNA_pol_Rpb2_6 | 40.3 | 3.10e-10 | 92.1% | 17.7% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hqmC01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.87 | 70.0 | 5.74e-01 | 84.3% | 96.8% |
| 1twfB06 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.86 | 70.0 | 5.62e-01 | 84.3% | 73.5% |
| 4ga6A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.75 | 49.0 | 5.88e-01 | 78.7% | 100.0% |
| 3hu1A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.74 | 49.0 | 5.51e-01 | 83.5% | 88.5% |
| 1cz4A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.73 | 50.0 | 5.80e-01 | 81.9% | 97.8% |
| 1y5lA02 | 3.40.50.12440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.66 | 54.0 | 3.07e-01 | 85.8% | 14.1% |
| 1q16A13 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.65 | 53.0 | 5.02e-01 | 85.8% | 94.7% |
| 1h0hA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.65 | 50.0 | 4.47e-01 | 81.1% | 75.6% |
| 1g8kA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.65 | 50.0 | 4.95e-01 | 81.1% | 87.4% |
| 2e7zA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.64 | 50.0 | 4.58e-01 | 81.1% | 85.7% |
| 2vpzA05 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.64 | 49.0 | 4.60e-01 | 81.1% | 82.4% |
| 1dmrA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.64 | 50.0 | 4.58e-01 | 81.9% | 82.8% |
| 2napA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.64 | 48.0 | 5.02e-01 | 78.0% | 100.0% |
| 8e9gG01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.63 | 47.0 | 5.23e-01 | 76.4% | 100.0% |
| 7eu1A01 | 1.10.274.100 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 | 0.63 | 51.0 | 4.95e-01 | 85.8% | 80.3% |
| 1ti2A04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.62 | 50.0 | 4.66e-01 | 84.3% | 91.6% |
| 1ogyA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.62 | 47.0 | 4.77e-01 | 78.0% | 94.3% |
| 7nz1G01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.62 | 45.0 | 5.12e-01 | 76.4% | 100.0% |
| 2ki8A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.60 | 47.0 | 4.78e-01 | 81.9% | 88.8% |
| 2iv2X04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.60 | 44.0 | 4.97e-01 | 81.1% | 100.0% |
ECOD (88)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4148017 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.90 | 72.0 | 5.80e-01 | 82.7% | 97.7% |
| 4167437 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.89 | 71.0 | 5.97e-01 | 81.9% | 97.4% |
| 4118150 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.89 | 71.0 | 6.39e-01 | 82.7% | 97.0% |
| 4492078 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.88 | 71.0 | 5.53e-01 | 84.3% | 98.0% |
| 4636141 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.88 | 71.0 | 6.21e-01 | 84.3% | 97.8% |
| 3613807 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.87 | 70.0 | 6.20e-01 | 84.3% | 97.7% |
| 4921633 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.86 | 66.0 | 5.49e-01 | 78.7% | 96.1% |
| 4946077 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.85 | 68.0 | 6.19e-01 | 81.9% | 98.1% |
| 4026622 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.85 | 69.0 | 6.00e-01 | 84.3% | 96.1% |
| 3600872 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.84 | 67.0 | 6.06e-01 | 82.7% | 98.8% |
| 4991006 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.79 | 52.0 | 6.31e-01 | 81.9% | 100.0% |
| 4970929 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.78 | 51.0 | 6.17e-01 | 79.5% | 100.0% |
| 5076635 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.78 | 51.0 | 6.18e-01 | 79.5% | 100.0% |
| 3706161 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.78 | 51.0 | 6.17e-01 | 85.8% | 100.0% |
| 4963913 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.77 | 48.0 | 5.99e-01 | 79.5% | 100.0% |
| 4526788 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.77 | 48.0 | 5.97e-01 | 77.2% | 100.0% |
| 5054391 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.77 | 51.0 | 6.11e-01 | 80.3% | 100.0% |
| 4445483 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.77 | 51.0 | 6.10e-01 | 79.5% | 100.0% |
| 5011232 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.77 | 48.0 | 5.94e-01 | 78.7% | 100.0% |
| 4945245 | 1.1.2.44 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Glycos_trans_3N | 0.77 | 48.0 | 5.88e-01 | 83.5% | 100.0% |
| 5060583 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.77 | 50.0 | 6.04e-01 | 81.1% | 100.0% |
| 5053173 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.76 | 52.0 | 5.96e-01 | 84.3% | 92.6% |
| 5043151 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.76 | 48.0 | 5.89e-01 | 80.3% | 100.0% |
| 5037727 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.76 | 50.0 | 6.01e-01 | 80.3% | 100.0% |
| 4981335 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 50.0 | 5.91e-01 | 80.3% | 100.0% |
| 4263053 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 50.0 | 5.92e-01 | 79.5% | 100.0% |
| 4108919 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 50.0 | 5.93e-01 | 82.7% | 100.0% |
| 5069203 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 52.0 | 6.07e-01 | 82.7% | 100.0% |
| 4927622 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.75 | 52.0 | 6.06e-01 | 81.1% | 100.0% |
| 4943103 | 1.1.2.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_2 | 0.75 | 49.0 | 5.92e-01 | 78.0% | 100.0% |
| 4446061 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 47.0 | 5.74e-01 | 81.1% | 100.0% |
| 4947745 | 1.1.2.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_2 | 0.75 | 52.0 | 6.03e-01 | 81.1% | 100.0% |
| 4967302 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 52.0 | 6.02e-01 | 82.7% | 100.0% |
| 4990349 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.74 | 46.0 | 5.71e-01 | 78.0% | 100.0% |
| 3602941 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.74 | 49.0 | 5.85e-01 | 81.1% | 100.0% |
| 4024752 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.74 | 51.0 | 5.70e-01 | 82.7% | 89.0% |
| 31 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.74 | 50.0 | 5.83e-01 | 81.1% | 96.7% |
| 5053341 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.74 | 52.0 | 5.80e-01 | 81.1% | 91.0% |
| 4938514 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.74 | 49.0 | 5.85e-01 | 78.7% | 100.0% |
| 4948370 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.74 | 51.0 | 5.02e-01 | 82.7% | 65.2% |
| 5001338 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.74 | 52.0 | 5.94e-01 | 85.8% | 96.8% |
| 4977837 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.74 | 49.0 | 5.81e-01 | 79.5% | 100.0% |
| 3486347 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.74 | 50.0 | 5.76e-01 | 82.7% | 93.7% |
| 4998501 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.73 | 48.0 | 5.73e-01 | 78.0% | 100.0% |
| 3409396 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.73 | 49.0 | 5.38e-01 | 81.9% | 82.9% |
| 4607187 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.73 | 49.0 | 5.60e-01 | 80.3% | 91.6% |
| 5077136 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.73 | 50.0 | 5.16e-01 | 70.1% | 95.8% |
| 3611762 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.72 | 50.0 | 5.68e-01 | 80.3% | 93.7% |
| 5060218 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.72 | 48.0 | 5.73e-01 | 78.0% | 100.0% |
| 3740563 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.72 | 52.0 | 5.95e-01 | 83.5% | 100.0% |
| 4944658 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.69 | 49.0 | 4.98e-01 | 72.4% | 93.6% |
| 4978588 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.69 | 49.0 | 4.96e-01 | 72.4% | 93.6% |
| 4934824 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.68 | 44.0 | 5.14e-01 | 78.7% | 96.5% |
| 4948584 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.68 | 45.0 | 5.42e-01 | 82.7% | 100.0% |
| 3967496 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.67 | 46.0 | 4.79e-01 | 70.1% | 91.7% |
| 5062140 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.66 | 46.0 | 4.99e-01 | 70.1% | 93.3% |
| 5005269 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.66 | 53.0 | 5.18e-01 | 85.0% | 96.4% |
| 3391395 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.66 | 49.0 | 5.46e-01 | 83.5% | 99.0% |
| 3391397 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.66 | 45.0 | 5.24e-01 | 83.5% | 100.0% |
| 4103114 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.66 | 52.0 | 5.09e-01 | 82.7% | 97.8% |
| 3890530 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.65 | 45.0 | 5.16e-01 | 78.7% | 98.9% |
| 3591362 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.65 | 48.0 | 5.19e-01 | 75.6% | 100.0% |
| 4995426 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.65 | 48.0 | 5.14e-01 | 83.5% | 88.2% |
| 4938597 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.65 | 51.0 | 5.24e-01 | 81.9% | 93.3% |
| 1878379 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.65 | 50.0 | 4.81e-01 | 80.3% | 98.6% |
| 4200338 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.64 | 48.0 | 5.28e-01 | 80.3% | 94.3% |
| 4486888 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.64 | 45.0 | 5.22e-01 | 73.2% | 100.0% |
| 5013618 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.64 | 51.0 | 5.05e-01 | 82.7% | 91.5% |
| 4885884 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.64 | 49.0 | 4.94e-01 | 78.7% | 94.4% |
| 1568967 | 1.1.2.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › KWL1 | 0.64 | 49.0 | 4.33e-01 | 80.3% | 65.0% |
| 3701559 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.64 | 51.0 | 5.21e-01 | 83.5% | 94.2% |
| 3287818 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.64 | 49.0 | 4.60e-01 | 81.1% | 85.8% |
| 3071125 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.64 | 49.0 | 5.16e-01 | 81.9% | 89.6% |
| 3312403 | 1.1.2.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › KWL1 | 0.64 | 49.0 | 4.94e-01 | 80.3% | 88.8% |
| 3993834 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.63 | 49.0 | 5.37e-01 | 84.3% | 99.0% |
| 3946287 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.63 | 50.0 | 4.78e-01 | 84.3% | 82.0% |
| 4949173 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.63 | 41.0 | 4.58e-01 | 77.2% | 83.8% |
| 2970378 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.63 | 48.0 | 5.04e-01 | 80.3% | 88.0% |
| 4939451 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.63 | 43.0 | 5.05e-01 | 76.4% | 100.0% |
| 4961752 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.62 | 50.0 | 4.65e-01 | 84.3% | 77.2% |
| 4271172 | 1.3.1.2 ↗ | beta barrels › cradle loop barrel › DP2 DPBB-1 domain › DP2 DPBB-1 domain › PolC_DP2_central | 0.62 | 49.0 | 4.70e-01 | 82.7% | 85.5% |
| 4048983 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.62 | 49.0 | 5.34e-01 | 85.0% | 100.0% |
| 4055412 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.61 | 50.0 | 4.71e-01 | 86.6% | 91.6% |
| 2968642 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.61 | 47.0 | 4.80e-01 | 81.1% | 83.6% |
| 4976387 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.59 | 40.0 | 4.67e-01 | 72.4% | 98.9% |
| 21 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.59 | 46.0 | 4.59e-01 | 84.3% | 78.9% |
| 3010131 | 1.1.2.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 | 0.58 | 45.0 | 4.93e-01 | 81.9% | 97.2% |
| 4395825 | 1.1.2.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_central | 0.56 | 46.0 | 4.05e-01 | 87.4% | 76.0% |
D5
medium
residues 441-541
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ybaA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.56 | 33.0 | 3.71e-01 | 97.0% | 76.6% |
| 1rfyB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.52 | 26.0 | 2.81e-01 | 72.3% | 52.3% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.51 | 28.0 | 3.13e-01 | 77.2% | 66.7% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 28.0 | 2.98e-01 | 71.3% | 60.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4425776 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.59 | 41.0 | 2.91e-01 | 71.3% | 86.3% |
| 3611481 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.52 | 37.0 | 2.66e-01 | 74.3% | 77.4% |
| 3518809 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 36.0 | 2.72e-01 | 95.0% | 27.8% |
| 4012664 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.51 | 35.0 | 3.55e-01 | 99.0% | 72.0% |