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pre1_saliva_scaffold_4_prodigal-single.1__X__X__00122
Bact-Virpre1_saliva_scaffold_4_prodigal-single.1__X__X__00122
Identity
- Kingdom:
- phage
Quality
56.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-169
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 32.0 | 3.47e-01 | 95.7% | 58.5% |
| 3butA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 32.0 | 3.61e-01 | 97.0% | 69.6% |
| 1lqvB00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.56 | 42.0 | 4.13e-01 | 90.2% | 72.8% |
| 2ichA01 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.55 | 47.0 | 4.54e-01 | 90.2% | 94.4% |
| 3htvA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 36.0 | 4.33e-01 | 75.0% | 100.0% |
| 2x1cB01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.53 | 45.0 | 3.79e-01 | 91.5% | 85.8% |
| 4e19A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 37.0 | 4.10e-01 | 82.9% | 89.5% |
| 4meeA00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.52 | 44.0 | 3.68e-01 | 92.7% | 83.2% |
| 5dl7A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.52 | 42.0 | 3.11e-01 | 83.5% | 100.0% |
| 3fzxA00 | 2.40.360.20 | Mainly Beta › Beta Barrel › YmcC-like fold › | 0.52 | 42.0 | 3.85e-01 | 84.8% | 97.2% |
| 1h4uA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 37.0 | 3.34e-01 | 97.0% | 51.0% |
| 1yvuA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 44.0 | 4.01e-01 | 93.3% | 74.8% |
| 3sy9C01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.51 | 41.0 | 3.17e-01 | 84.8% | 100.0% |
| 2ap1A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 40.0 | 4.33e-01 | 85.4% | 100.0% |
| 2qomB00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.50 | 45.0 | 3.84e-01 | 98.2% | 89.6% |
| 2c4iA01 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.50 | 35.0 | 4.03e-01 | 84.8% | 100.0% |
| 3u3gA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 37.0 | 3.97e-01 | 81.7% | 88.6% |
| 3qq2B00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.50 | 44.0 | 3.90e-01 | 97.6% | 92.8% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3969815 | 4210.1.1.5 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › PA4575 | 0.70 | 35.0 | 4.44e-01 | 81.1% | 79.0% |
| 3355734 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.55 | 36.0 | 4.30e-01 | 80.5% | 100.0% |
| 1149586 | 2484.1.1.8 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK | 0.54 | 38.0 | 4.25e-01 | 82.3% | 92.9% |
| 3701124 | 4252.1.1.1 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › CrtC | 0.54 | 45.0 | 4.32e-01 | 88.4% | 93.7% |
| 5033918 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.52 | 46.0 | 4.47e-01 | 99.4% | 86.1% |
| 3974567 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.51 | 45.0 | 3.94e-01 | 99.4% | 88.3% |
| 4928654 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 44.0 | 3.98e-01 | 94.5% | 70.9% |
| 3806972 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.51 | 46.0 | 3.57e-01 | 100.0% | 48.6% |
| 5037123 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.51 | 38.0 | 4.20e-01 | 84.1% | 97.7% |
| 4947486 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 36.0 | 3.89e-01 | 79.3% | 86.7% |
D2
high
residues 218-285