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pre1_saliva_scaffold_4_prodigal-single.1__X__X__00167
Bact-Virpre1_saliva_scaffold_4_prodigal-single.1__X__X__00167
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 37-205
Domain cluster:
rep: Hypothetical_protein_SPPV_50__NP_659626__Sheeppox_virus__10266__D1-82_143-236
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xo1A02 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.81 | 62.0 | 6.41e-01 | 95.3% | 83.6% |
| 3zdbA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.79 | 68.0 | 7.02e-01 | 97.6% | 96.8% |
| 5v07Z01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.70 | 65.0 | 6.07e-01 | 100.0% | 91.3% |
| 1u3dA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.69 | 51.0 | 5.20e-01 | 90.5% | 78.3% |
| 2p11A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.66 | 48.0 | 5.17e-01 | 93.5% | 86.2% |
| 3pieC01 | 3.40.50.12390 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.66 | 61.0 | 5.20e-01 | 99.4% | 63.5% |
| 7lgnB03 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.65 | 45.0 | 4.88e-01 | 88.2% | 84.8% |
| 4gvlA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 43.0 | 4.77e-01 | 95.3% | 83.1% |
| 4g65A03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 43.0 | 4.75e-01 | 95.3% | 85.1% |
| 1t9hA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 50.0 | 5.30e-01 | 94.7% | 93.8% |
| 3tnjA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.63 | 44.0 | 5.01e-01 | 92.3% | 98.3% |
| 1ej2A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.62 | 44.0 | 4.45e-01 | 91.1% | 72.5% |
| 2wteA01 | 3.40.50.11700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 48.0 | 5.27e-01 | 96.4% | 100.0% |
| 3kl2F00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.62 | 55.0 | 5.24e-01 | 97.6% | 94.5% |
| 4h08A00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.61 | 46.0 | 4.38e-01 | 78.1% | 66.0% |
| 4rw0A00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.61 | 45.0 | 4.40e-01 | 76.9% | 70.1% |
| 1z8hA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.61 | 46.0 | 4.31e-01 | 78.1% | 68.8% |
| 6d2xA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.61 | 51.0 | 4.12e-01 | 89.3% | 76.8% |
| 5ywwA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.60 | 40.0 | 4.71e-01 | 89.3% | 100.0% |
| 2q5cA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 33.0 | 4.15e-01 | 94.7% | 92.8% |
| 2hsjD00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.59 | 44.0 | 4.07e-01 | 77.5% | 63.6% |
| 3milB00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.59 | 44.0 | 3.97e-01 | 78.7% | 63.4% |
| 1q77A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.58 | 45.0 | 4.91e-01 | 91.1% | 98.6% |
| 6jixA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.58 | 42.0 | 3.54e-01 | 73.4% | 65.9% |
| 1db3A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 43.0 | 3.95e-01 | 76.9% | 62.1% |
| 3gbvA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 43.0 | 4.57e-01 | 100.0% | 87.9% |
| 4kl0A00 | 3.90.245.10 | Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like | 0.57 | 53.0 | 4.10e-01 | 98.8% | 87.4% |
| 4xvhA02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.57 | 43.0 | 3.92e-01 | 78.1% | 59.9% |
| 1kblA04 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.57 | 51.0 | 4.06e-01 | 98.2% | 93.0% |
| 4k7jA01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.57 | 42.0 | 3.85e-01 | 77.5% | 60.2% |
| 3s3tA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.57 | 46.0 | 4.90e-01 | 92.3% | 99.3% |
| 5kiaA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 41.0 | 4.50e-01 | 100.0% | 94.0% |
| 4dqlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.56 | 49.0 | 5.09e-01 | 94.1% | 97.5% |
| 3epnB01 | 3.20.20.540 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Radical SAM ThiC family, central domain | 0.56 | 47.0 | 3.89e-01 | 90.5% | 78.1% |
| 1ygpA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.56 | 49.0 | 3.92e-01 | 96.4% | 75.2% |
| 2gm3A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.55 | 44.0 | 4.62e-01 | 91.1% | 92.2% |
| 3cerC01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 39.0 | 4.44e-01 | 94.1% | 96.9% |
| 3hgmA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 45.0 | 4.77e-01 | 91.1% | 100.0% |
| 2plrA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 40.0 | 3.76e-01 | 76.9% | 97.6% |
| 3ndnA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.54 | 37.0 | 3.22e-01 | 75.1% | 46.2% |
| 1uwvA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 45.0 | 4.25e-01 | 100.0% | 73.4% |
| 3gqvA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 40.0 | 3.87e-01 | 99.4% | 68.4% |
| 3idfA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 41.0 | 4.46e-01 | 91.1% | 99.3% |
| 2qv7A01 | 3.40.50.10330 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 | 0.53 | 42.0 | 4.57e-01 | 98.2% | 97.2% |
| 5izdA02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.52 | 45.0 | 4.32e-01 | 91.7% | 98.4% |
| 4c3sA02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.52 | 44.0 | 4.30e-01 | 91.1% | 97.3% |
| 3rjlA02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.51 | 44.0 | 4.27e-01 | 92.3% | 97.9% |
| 3d3aA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 46.0 | 3.94e-01 | 99.4% | 79.6% |
ECOD (70)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3969358 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.79 | 71.0 | 7.36e-01 | 95.9% | 99.4% |
| 4299585 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.79 | 72.0 | 7.03e-01 | 97.6% | 88.1% |
| 4157264 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.78 | 72.0 | 7.11e-01 | 98.2% | 97.2% |
| 4125023 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.78 | 72.0 | 7.23e-01 | 97.6% | 97.6% |
| 4324598 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.78 | 70.0 | 6.82e-01 | 97.6% | 87.0% |
| 3387660 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.77 | 70.0 | 7.08e-01 | 97.6% | 95.9% |
| 4044568 | 2006.1.4.17 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF188 | 0.77 | 47.0 | 5.13e-01 | 96.4% | 71.7% |
| 4222519 | 7512.1.1.82 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › DUF188 | 0.77 | 47.0 | 5.13e-01 | 96.4% | 71.7% |
| 3283240 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.77 | 71.0 | 6.76e-01 | 97.6% | 93.3% |
| 3942272 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.75 | 69.0 | 6.92e-01 | 97.0% | 99.4% |
| 3716763 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.75 | 70.0 | 5.99e-01 | 98.8% | 81.6% |
| 4628515 | 2006.1.4.5 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XRN_N | 0.75 | 68.0 | 5.74e-01 | 97.0% | 92.7% |
| 4443696 | 2006.1.4.5 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XRN_N | 0.75 | 70.0 | 5.50e-01 | 100.0% | 91.3% |
| 3388170 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.72 | 49.0 | 5.74e-01 | 92.3% | 97.5% |
| 3560378 | 2006.1.4.19 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N | 0.71 | 67.0 | 5.40e-01 | 100.0% | 61.0% |
| 3472483 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.70 | 66.0 | 5.30e-01 | 100.0% | 93.5% |
| 3486531 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.70 | 66.0 | 5.61e-01 | 100.0% | 80.8% |
| 3498626 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.70 | 66.0 | 5.66e-01 | 100.0% | 73.7% |
| 3471700 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.70 | 66.0 | 5.83e-01 | 100.0% | 75.3% |
| 3627555 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.70 | 66.0 | 6.12e-01 | 100.0% | 91.7% |
| 3838580 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.70 | 64.0 | 6.25e-01 | 97.6% | 94.4% |
| 3238117 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.69 | 64.0 | 6.13e-01 | 100.0% | 91.8% |
| 5044998 | 2006.1.4.25 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_I | 0.69 | 64.0 | 6.02e-01 | 100.0% | 92.7% |
| 3610118 | 2006.1.4.46 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N, XPG_I, XPG_I_2 | 0.69 | 64.0 | 5.34e-01 | 100.0% | 69.4% |
| 3729688 | 7568.1.1.0 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain | 0.68 | 37.0 | 4.73e-01 | 94.7% | 89.0% |
| 3484303 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.68 | 64.0 | 6.15e-01 | 100.0% | 90.5% |
| 3781390 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.67 | 63.0 | 5.76e-01 | 100.0% | 91.6% |
| 4081900 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.65 | 47.0 | 4.86e-01 | 91.1% | 78.8% |
| 3808000 | 2007.5.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL | 0.65 | 49.0 | 3.73e-01 | 78.1% | 61.1% |
| 3299143 | 2007.5.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL | 0.65 | 49.0 | 3.87e-01 | 78.1% | 67.8% |
| 3970680 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.64 | 46.0 | 5.23e-01 | 91.1% | 99.2% |
| 5052954 | 2002.1.1.57 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D | 0.63 | 53.0 | 4.00e-01 | 88.8% | 79.7% |
| 4950642 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.62 | 33.0 | 4.42e-01 | 91.1% | 100.0% |
| 4988570 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.62 | 43.0 | 5.00e-01 | 88.8% | 99.2% |
| 4539035 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.61 | 45.0 | 4.17e-01 | 75.1% | 100.0% |
| 3319184 | 2005.1.1.41 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_C | 0.61 | 54.0 | 5.35e-01 | 94.1% | 98.3% |
| 4937176 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.61 | 45.0 | 5.08e-01 | 90.5% | 100.0% |
| 3234919 | 2006.1.4.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 | 0.61 | 54.0 | 5.22e-01 | 95.3% | 95.8% |
| 3607486 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.60 | 55.0 | 4.89e-01 | 97.0% | 82.1% |
| 4997379 | 2002.1.1.57 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D | 0.58 | 49.0 | 3.93e-01 | 89.3% | 80.9% |
| 4959832 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.58 | 41.0 | 4.57e-01 | 92.3% | 91.0% |
| 3296979 | 2005.1.1.41 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_C | 0.58 | 51.0 | 4.91e-01 | 94.1% | 86.7% |
| 5077036 | 7512.1.1.8 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Epimerase_2 | 0.58 | 53.0 | 4.97e-01 | 96.4% | 81.5% |
| 3788500 | 7514.1.1.3 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 | 0.58 | 51.0 | 5.30e-01 | 94.7% | 99.4% |
| 3227257 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 42.0 | 4.12e-01 | 75.1% | 100.0% |
| None | — | 0.56 | 49.0 | 3.86e-01 | 94.1% | 75.5% | |
| 3267040 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.56 | 45.0 | 4.88e-01 | 89.9% | 100.0% |
| 5038190 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.56 | 41.0 | 4.07e-01 | 76.3% | 100.0% |
| 5071580 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.55 | 49.0 | 4.89e-01 | 94.1% | 98.2% |
| 4983835 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.55 | 42.0 | 4.59e-01 | 90.5% | 100.0% |
| 5014519 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.54 | 43.0 | 4.53e-01 | 89.9% | 94.0% |
| 2842011 | 7570.1.1.1 ↗ | a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C | 0.54 | 45.0 | 4.78e-01 | 89.3% | 99.3% |
| 3197694 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.54 | 41.0 | 3.95e-01 | 91.1% | 69.5% |
| 4988576 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.54 | 44.0 | 4.70e-01 | 91.1% | 98.7% |
| 4959883 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.54 | 44.0 | 4.69e-01 | 91.7% | 99.3% |
| 3924007 | 2007.9.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain | 0.54 | 35.0 | 3.62e-01 | 96.4% | 68.8% |
| 3271830 | 7590.1.1.7 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI | 0.53 | 38.0 | 3.63e-01 | 74.6% | 82.0% |
| 4665808 | 2004.1.1.60 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SKI | 0.52 | 40.0 | 3.98e-01 | 79.3% | 100.0% |
| 3190609 | 2002.1.1.106 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD | 0.52 | 45.0 | 3.67e-01 | 92.3% | 94.0% |
| 3289454 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.52 | 42.0 | 4.18e-01 | 84.0% | 88.0% |
| 3394054 | 2002.1.1.96 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › S-methyl_trans | 0.52 | 47.0 | 3.80e-01 | 98.2% | 82.8% |
| 4487962 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.52 | 43.0 | 4.57e-01 | 91.7% | 100.0% |
| 3837240 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.52 | 44.0 | 4.41e-01 | 94.7% | 88.0% |
| 3270756 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.51 | 42.0 | 4.40e-01 | 91.7% | 94.8% |
| 4998772 | 2484.1.1.337 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RRXRR | 0.51 | 44.0 | 4.48e-01 | 91.1% | 96.4% |
| 3470605 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.51 | 43.0 | 4.52e-01 | 92.3% | 100.0% |
| 3835401 | 2007.9.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR | 0.51 | 38.0 | 4.11e-01 | 76.9% | 98.6% |
| 5082342 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.51 | 41.0 | 4.45e-01 | 90.5% | 100.0% |
| 5058111 | 2002.1.1.3 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TIM | 0.51 | 43.0 | 3.70e-01 | 90.5% | 77.4% |
| 5001005 | 2002.1.1.79 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF72 | 0.50 | 42.0 | 3.76e-01 | 89.3% | 75.8% |
D2
high
residues 214-270
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zdbA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.79 | 72.0 | 6.16e-01 | 100.0% | 78.7% |
| 5hmlA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.78 | 68.0 | 6.13e-01 | 100.0% | 88.7% |
| 8fefH01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 43.0 | 2.79e-01 | 91.2% | 22.4% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2074406 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.82 | 74.0 | 5.98e-01 | 100.0% | 67.0% |
| 1346599 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.80 | 52.0 | 5.38e-01 | 84.2% | 70.4% |
| None | — | 0.80 | 73.0 | 6.18e-01 | 100.0% | 78.9% | |
| 4030601 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.80 | 72.0 | 5.66e-01 | 100.0% | 60.9% |
| 3593817 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.80 | 72.0 | 6.42e-01 | 100.0% | 88.7% |
| 2168201 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.80 | 71.0 | 5.47e-01 | 100.0% | 58.7% |
| 3956065 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.79 | 71.0 | 6.33e-01 | 100.0% | 92.5% |
| 4364220 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.79 | 72.0 | 5.56e-01 | 100.0% | 60.8% |
| 4319500 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.79 | 71.0 | 4.14e-01 | 100.0% | 15.2% |
| 3964109 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.79 | 71.0 | 6.45e-01 | 100.0% | 93.3% |
| 4644646 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.78 | 71.0 | 6.14e-01 | 100.0% | 81.2% |
| 4575153 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.78 | 70.0 | 5.66e-01 | 100.0% | 66.7% |
| 4299586 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.77 | 67.0 | 5.98e-01 | 96.5% | 93.8% |
| 4481584 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.76 | 68.0 | 5.39e-01 | 100.0% | 63.5% |
| 3838579 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.76 | 68.0 | 6.04e-01 | 100.0% | 88.7% |
| 3942250 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.74 | 65.0 | 4.96e-01 | 100.0% | 65.2% |