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pre1_saliva_scaffold_4_prodigal-single.1__X__X__00171
Bact-Virpre1_saliva_scaffold_4_prodigal-single.1__X__X__00171
Identity
- Kingdom:
- phage
Quality
66.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 207-327
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.57 | 19.0 | 2.62e-01 | 98.3% | 50.0% |
| 3fy6A01 | 3.30.2210.10 | Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily | 0.56 | 37.0 | 3.93e-01 | 95.0% | 75.7% |
| 6jptA00 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.54 | 47.0 | 4.76e-01 | 95.9% | 94.2% |
| 3wa7A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 37.0 | 2.52e-01 | 76.0% | 96.4% |
| 1srqA01 | 3.30.1120.160 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 32.0 | 3.10e-01 | 90.9% | 55.1% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3626785 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.76 | 71.0 | 6.16e-01 | 100.0% | 89.4% |
| 4028525 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.76 | 71.0 | 6.01e-01 | 100.0% | 88.9% |
| 3491449 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.76 | 71.0 | 6.01e-01 | 100.0% | 89.5% |
| 3306595 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.75 | 70.0 | 6.09e-01 | 100.0% | 89.1% |
| 3592763 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.75 | 70.0 | 5.92e-01 | 100.0% | 87.9% |
| 3509892 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.75 | 70.0 | 6.08e-01 | 100.0% | 90.9% |
| 3786329 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.63 | 26.0 | 3.76e-01 | 76.9% | 83.6% |
| 4031638 | 7089.1.1.1 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF1108 | 0.57 | 31.0 | 3.66e-01 | 79.3% | 75.3% |
| 4256135 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.54 | 36.0 | 3.12e-01 | 99.2% | 42.6% |
| 3916753 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.53 | 37.0 | 3.43e-01 | 71.9% | 92.5% |
| 3797651 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.53 | 29.0 | 3.32e-01 | 77.7% | 70.0% |
| 5019887 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.52 | 28.0 | 3.52e-01 | 97.5% | 87.7% |
| 3410208 | 331.17.1.1 ↗ | a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 | 0.51 | 40.0 | 3.58e-01 | 97.5% | 58.8% |
| 3597646 | 331.17.1.0 ↗ | a+b two layers › TBP-like › Atp11 › Atp11 | 0.51 | 40.0 | 3.53e-01 | 97.5% | 57.1% |
| 3791839 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.51 | 30.0 | 3.55e-01 | 95.0% | 87.5% |
| 3537588 | 331.17.1.1 ↗ | a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 | 0.51 | 40.0 | 3.55e-01 | 97.5% | 57.7% |
| 4450355 | 3662.1.1.1 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 | 0.51 | 42.0 | 4.29e-01 | 92.6% | 100.0% |
| 3230771 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.51 | 30.0 | 3.42e-01 | 95.0% | 78.9% |
| 3389668 | 220.1.1.160 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD | 0.50 | 36.0 | 3.89e-01 | 99.2% | 89.0% |
| 3579987 | 220.1.1.160 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD | 0.50 | 36.0 | 3.75e-01 | 99.2% | 80.9% |
D2
medium
residues 30-104_172-196_366-421
D3
medium
residues 105-171
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ibkB00 | 1.20.1280.50 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.64 | 33.0 | 3.77e-01 | 70.1% | 67.4% |
| 1tjoB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.63 | 51.0 | 3.86e-01 | 92.5% | 49.7% |
| 6wxrA01 | 1.10.640.10 | Mainly Alpha › Orthogonal Bundle › Myeloperoxidase, subunit C › Haem peroxidase domain superfamily, animal type | 0.63 | 51.0 | 3.13e-01 | 94.0% | 91.6% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 41.0 | 3.99e-01 | 70.1% | 80.3% |
| 1jwjA01 | 3.90.340.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 | 0.58 | 45.0 | 3.34e-01 | 83.6% | 55.0% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.58 | 47.0 | 4.39e-01 | 89.6% | 88.4% |
| 1i1rB00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.57 | 49.0 | 3.71e-01 | 100.0% | 85.0% |
| 1ks9A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.56 | 38.0 | 3.20e-01 | 71.6% | 87.8% |
| 1tfkA00 | 3.10.450.200 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 38.0 | 3.40e-01 | 73.1% | 79.8% |
| 1dlwA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 38.0 | 3.33e-01 | 80.6% | 62.1% |
| 2o8iA00 | 1.10.3330.10 | Mainly Alpha › Orthogonal Bundle › UraD-like › Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase | 0.52 | 41.0 | 3.20e-01 | 85.1% | 56.5% |
| 3mg2B01 | 1.10.2090.10 | Mainly Alpha › Orthogonal Bundle › orange carotenoid protein, domain 2 › Orange carotenoid-binding protein, N-terminal domain | 0.52 | 45.0 | 3.58e-01 | 100.0% | 65.3% |
| 1td6A03 | 1.10.472.40 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 | 0.51 | 36.0 | 3.32e-01 | 86.6% | 55.4% |
| 2qvwA04 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.51 | 39.0 | 3.24e-01 | 92.5% | 96.6% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3794380 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.72 | 49.0 | 4.46e-01 | 70.1% | 83.3% |
| 3237327 | 5001.1.1.21 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › DUF1182 | 0.65 | 45.0 | 2.94e-01 | 73.1% | 15.8% |
| 3236464 | 196.1.1.1 ↗ | alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS | 0.64 | 49.0 | 3.92e-01 | 82.1% | 65.9% |
| 3649160 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.62 | 49.0 | 3.27e-01 | 91.0% | 32.9% |
| 4995756 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 39.0 | 4.03e-01 | 71.6% | 69.2% |
| 4213215 | 150.3.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL6 | 0.60 | 54.0 | 3.95e-01 | 100.0% | 80.6% |
| 4511226 | 6102.1.1.1 ↗ | alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › SMC_ScpA | 0.59 | 44.0 | 3.47e-01 | 82.1% | 47.1% |
| 5040483 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.59 | 36.0 | 3.17e-01 | 74.6% | 43.2% |
| 3861124 | 109.27.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK | 0.58 | 40.0 | 3.02e-01 | 77.6% | 27.4% |
| 3457573 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.58 | 46.0 | 3.08e-01 | 88.1% | 44.0% |
| 5079588 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.58 | 42.0 | 3.81e-01 | 77.6% | 81.1% |
| 3450860 | 185.1.1.6 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl, Gliadin | 0.54 | 39.0 | 3.58e-01 | 82.1% | 78.8% |