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pre1_saliva_scaffold_4_prodigal-single.1__X__X__00183

Bact-Vir

pre1_saliva_scaffold_4_prodigal-single.1__X__X__00183

Identity

Kingdom:
phage

Quality

58.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 297-389
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.58 35.0 4.11e-01 83.9% 88.9%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959053 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 34.0 2.69e-01 95.7% 27.0%
3614751 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.59 36.0 3.57e-01 76.3% 57.1%
4935436 268.1.1.0 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.54 31.0 2.86e-01 71.0% 45.2%
3468484 101.1.12.0 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.52 19.0 3.07e-01 76.3% 100.0%
3407322 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.52 40.0 4.00e-01 86.0% 83.0%
3496489 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.51 21.0 2.83e-01 73.1% 71.1%
4961975 2492.1.1.62 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › PF26422 0.51 36.0 3.15e-01 73.1% 94.5%
D2 medium residues 1-28_46-138
PDB