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pre1_saliva_scaffold_4_prodigal-single.1__X__X__00183
Bact-Virpre1_saliva_scaffold_4_prodigal-single.1__X__X__00183
Identity
- Kingdom:
- phage
Quality
58.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 297-389
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4v0bA00 | 3.30.720.210 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.58 | 35.0 | 4.11e-01 | 83.9% | 88.9% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3959053 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.62 | 34.0 | 2.69e-01 | 95.7% | 27.0% |
| 3614751 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.59 | 36.0 | 3.57e-01 | 76.3% | 57.1% |
| 4935436 | 268.1.1.0 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related | 0.54 | 31.0 | 2.86e-01 | 71.0% | 45.2% |
| 3468484 | 101.1.12.0 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures | 0.52 | 19.0 | 3.07e-01 | 76.3% | 100.0% |
| 3407322 | 220.1.1.52 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C | 0.52 | 40.0 | 4.00e-01 | 86.0% | 83.0% |
| 3496489 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.51 | 21.0 | 2.83e-01 | 73.1% | 71.1% |
| 4961975 | 2492.1.1.62 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › PF26422 | 0.51 | 36.0 | 3.15e-01 | 73.1% | 94.5% |
D2
medium
residues 1-28_46-138