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pre1_saliva_scaffold_4_prodigal-single.1__X__X__00187
Bact-Virpre1_saliva_scaffold_4_prodigal-single.1__X__X__00187
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-130
Domain cluster:
rep: Bro25__YP_009702174__Heliothis_virescens_ascovirus_3g__1246651__D4-128
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sbxA00 | 3.10.260.20 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski | 0.69 | 48.0 | 5.21e-01 | 70.3% | 92.5% |
| 1yelA00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.68 | 32.0 | 3.53e-01 | 81.2% | 54.9% |
| 4lduA02 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.65 | 33.0 | 3.65e-01 | 85.2% | 59.4% |
| 3f6zB01 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.63 | 33.0 | 4.12e-01 | 78.9% | 82.3% |
| 6kjuB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.61 | 32.0 | 3.35e-01 | 75.8% | 53.0% |
| 4g29A00 | 3.10.670.10 | Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. | 0.57 | 39.0 | 3.64e-01 | 88.3% | 54.8% |
| 3zqsA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 31.0 | 3.63e-01 | 79.7% | 80.7% |
| 6ruiB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.53 | 47.0 | 4.18e-01 | 97.7% | 96.7% |
| 4az3A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 43.0 | 3.41e-01 | 89.8% | 52.9% |
| 3oe3C00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.51 | 34.0 | 3.96e-01 | 77.3% | 97.7% |
| 2ebkA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.50 | 34.0 | 3.47e-01 | 84.4% | 68.0% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3968916 | 101.1.9.63 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N | 0.86 | 68.0 | 7.50e-01 | 88.3% | 100.0% |
| 3163642 | 101.1.9.63 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N | 0.80 | 65.0 | 6.98e-01 | 85.2% | 99.1% |
| 3966647 | 9.11.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like | 0.63 | 34.0 | 3.88e-01 | 79.7% | 69.5% |
| 5059099 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.62 | 31.0 | 3.72e-01 | 85.9% | 69.3% |
| 3418904 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.60 | 42.0 | 4.71e-01 | 88.3% | 94.0% |
| 3665028 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.58 | 34.0 | 4.02e-01 | 94.5% | 82.2% |
| 4927858 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 27.0 | 3.81e-01 | 85.2% | 100.0% |
| 3673333 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.57 | 33.0 | 3.43e-01 | 85.2% | 60.0% |
| 3629488 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.54 | 33.0 | 3.44e-01 | 78.9% | 66.1% |
| 5038693 | 213.1.1.17 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF1122 | 0.52 | 37.0 | 3.18e-01 | 72.7% | 86.0% |
| 3348638 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.52 | 40.0 | 4.21e-01 | 87.5% | 90.4% |
| 3823072 | 2484.1.1.165 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 44.0 | 2.98e-01 | 96.1% | 31.4% |
| 4027047 | 241.6.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits | 0.51 | 37.0 | 3.66e-01 | 76.6% | 78.6% |