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pre3_saliva_scaffold_18_prodigal-single.1__X__X__00061
Bact-Virpre3_saliva_scaffold_18_prodigal-single.1__X__X__00061
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 155-263
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00132__D47-143
D2
medium
residues 264-394
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5fgoA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 23.0 | 3.27e-01 | 90.1% | 82.3% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5074458 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.63 | 29.0 | 2.66e-01 | 83.2% | 32.9% |
| 3920534 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.58 | 20.0 | 2.06e-01 | 87.0% | 28.8% |
| 5077628 | 3103.1.1.0 ↗ | alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN | 0.57 | 37.0 | 4.43e-01 | 84.7% | 100.0% |
| 3578718 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.56 | 32.0 | 3.64e-01 | 96.2% | 74.7% |
| None | — | 0.54 | 35.0 | 3.68e-01 | 97.7% | 71.7% | |
| 3451705 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.53 | 35.0 | 3.42e-01 | 94.7% | 60.0% |
| 4019411 | 101.21.1.0 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit | 0.52 | 28.0 | 3.66e-01 | 93.1% | 93.3% |
| 4957561 | 6050.1.1.0 ↗ | a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone | 0.52 | 37.0 | 4.02e-01 | 81.7% | 92.4% |
| 4944225 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 38.0 | 3.72e-01 | 77.1% | 80.0% |
| 4965885 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.51 | 29.0 | 3.41e-01 | 84.7% | 81.1% |