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pre3_saliva_scaffold_18_prodigal-single.1__X__X__00107
Bact-Virpre3_saliva_scaffold_18_prodigal-single.1__X__X__00107
Identity
- Kingdom:
- phage
Quality
88.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-97
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ci0K01 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.72 | 46.0 | 4.34e-01 | 81.8% | 55.8% |
| 2lpuA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.71 | 59.0 | 4.92e-01 | 89.8% | 87.2% |
| 1vprA03 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.71 | 47.0 | 3.80e-01 | 77.3% | 37.6% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.66 | 54.0 | 4.48e-01 | 88.6% | 79.6% |
| 4hgzA02 | 2.20.25.570 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.66 | 40.0 | 4.74e-01 | 71.6% | 90.0% |
| 7jvhC01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.65 | 55.0 | 3.76e-01 | 95.5% | 44.4% |
| 1srqA01 | 3.30.1120.160 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.63 | 47.0 | 4.06e-01 | 89.8% | 50.0% |
| 1lhpA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.63 | 43.0 | 2.98e-01 | 71.6% | 52.3% |
| 2wjqA00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.62 | 43.0 | 3.34e-01 | 72.7% | 35.6% |
| 4l9cA00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.62 | 56.0 | 4.66e-01 | 98.9% | 69.3% |
| 4ge1C00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.62 | 54.0 | 4.22e-01 | 98.9% | 91.2% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.61 | 43.0 | 4.44e-01 | 73.9% | 76.2% |
| 1lkfA00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.61 | 54.0 | 3.76e-01 | 97.7% | 98.3% |
| 2w35A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.59 | 47.0 | 3.50e-01 | 85.2% | 83.4% |
| 3e99A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 39.0 | 3.33e-01 | 70.5% | 89.9% |
| 1q47A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 49.0 | 3.14e-01 | 100.0% | 30.0% |
| 6nhsA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.57 | 48.0 | 3.53e-01 | 94.3% | 63.2% |
| 4jf6A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 47.0 | 3.51e-01 | 94.3% | 62.8% |
| 3afcA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 50.0 | 3.15e-01 | 100.0% | 30.2% |
| 2bngC00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 40.0 | 3.52e-01 | 76.1% | 91.4% |
| 3en8A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 39.0 | 3.59e-01 | 71.6% | 93.8% |
| 5kkuD00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.56 | 48.0 | 3.39e-01 | 95.5% | 98.2% |
| 1tp6A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 39.0 | 3.46e-01 | 71.6% | 97.6% |
| 2zxqA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 44.0 | 3.15e-01 | 87.5% | 50.9% |
| 3kg7B00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.55 | 50.0 | 3.46e-01 | 100.0% | 97.5% |
| 5ay6A01 | 2.60.98.20 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE | 0.55 | 48.0 | 3.92e-01 | 100.0% | 78.4% |
| 3w15A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 46.0 | 3.17e-01 | 96.6% | 31.7% |
| 1lf6A01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 47.0 | 3.36e-01 | 97.7% | 74.7% |
| 2owpA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 38.0 | 3.38e-01 | 76.1% | 89.9% |
| 5swiD01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 44.0 | 3.35e-01 | 97.7% | 89.3% |
| 3tfzB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 45.0 | 3.65e-01 | 95.5% | 95.8% |
| 1t17A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 45.0 | 3.78e-01 | 95.5% | 98.6% |
| 3hm0A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 35.0 | 3.20e-01 | 71.6% | 100.0% |
| 3bnvD00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 40.0 | 3.54e-01 | 89.8% | 86.0% |
| 3rd6A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 42.0 | 3.54e-01 | 88.6% | 64.6% |
| 1njkA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 35.0 | 3.14e-01 | 73.9% | 100.0% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3217673 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.74 | 55.0 | 5.17e-01 | 88.6% | 64.8% |
| 3253394 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.72 | 62.0 | 5.03e-01 | 94.3% | 74.8% |
| 3781112 | 3561.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 | 0.70 | 56.0 | 3.50e-01 | 86.4% | 20.4% |
| 3920557 | 4210.1.1.3 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › PF26166 | 0.69 | 56.0 | 5.52e-01 | 92.0% | 81.1% |
| 3238811 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.69 | 56.0 | 3.76e-01 | 86.4% | 24.8% |
| 865437 | 241.1.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C | 0.68 | 56.0 | 4.69e-01 | 89.8% | 77.5% |
| 4346250 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.67 | 61.0 | 5.18e-01 | 100.0% | 77.9% |
| 3496143 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.66 | 50.0 | 4.22e-01 | 88.6% | 49.0% |
| 3691934 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.65 | 59.0 | 3.67e-01 | 98.9% | 86.0% |
| 3408994 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.65 | 55.0 | 3.96e-01 | 90.9% | 90.9% |
| 4160858 | 241.1.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C | 0.65 | 53.0 | 4.46e-01 | 88.6% | 91.9% |
| 3167349 | 881.5.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Respiratory growth induced protein 1 › Respiratory growth induced protein 1 › RGI1 | 0.65 | 41.0 | 3.39e-01 | 70.5% | 36.7% |
| 3938828 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.63 | 55.0 | 3.53e-01 | 97.7% | 47.1% |
| 3491456 | 3369.1.1.0 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 | 0.62 | 49.0 | 4.11e-01 | 84.1% | 68.7% |
| 3271615 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 55.0 | 3.49e-01 | 96.6% | 65.7% |
| 3479009 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.62 | 43.0 | 3.62e-01 | 70.5% | 59.3% |
| 3782746 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.62 | 43.0 | 4.01e-01 | 71.6% | 70.0% |
| 3215260 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.62 | 57.0 | 4.83e-01 | 100.0% | 90.7% |
| 3963175 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.62 | 54.0 | 4.23e-01 | 95.5% | 78.9% |
| 3827726 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.62 | 55.0 | 3.83e-01 | 98.9% | 40.0% |
| 3788774 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.60 | 53.0 | 4.56e-01 | 100.0% | 74.5% |
| 4979757 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.60 | 54.0 | 4.48e-01 | 100.0% | 77.3% |
| 3804281 | 243.1.1.45 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › S6PP_C | 0.60 | 42.0 | 3.66e-01 | 73.9% | 92.0% |
| 3245577 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.59 | 53.0 | 4.51e-01 | 100.0% | 86.2% |
| 4969244 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 50.0 | 3.36e-01 | 95.5% | 33.8% |
| 3258590 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.59 | 48.0 | 4.70e-01 | 87.5% | 89.5% |
| 3403847 | 9.1.1.47 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Chitin_bind_4 | 0.59 | 47.0 | 4.68e-01 | 86.4% | 83.3% |
| 3225193 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.58 | 52.0 | 4.46e-01 | 100.0% | 82.1% |
| 4638787 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.57 | 46.0 | 4.81e-01 | 92.0% | 97.5% |
| 3517823 | 4026.1.1.1 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer | 0.57 | 47.0 | 3.87e-01 | 89.8% | 56.2% |
| 3225807 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.57 | 51.0 | 4.40e-01 | 100.0% | 82.1% |
| 4927801 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 49.0 | 4.26e-01 | 94.3% | 74.8% |
| 3828639 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.57 | 50.0 | 4.16e-01 | 100.0% | 86.9% |
| 3303238 | 10.1.1.11 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 | 0.56 | 51.0 | 4.57e-01 | 100.0% | 85.8% |
| 3589216 | 2003.1.5.151 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 | 0.56 | 39.0 | 2.80e-01 | 71.6% | 36.7% |
| 3174442 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 47.0 | 3.44e-01 | 96.6% | 80.8% |
| 3241005 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.55 | 48.0 | 4.26e-01 | 100.0% | 88.1% |
| 5049570 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.55 | 39.0 | 2.84e-01 | 73.9% | 81.3% |
| 3593584 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.55 | 45.0 | 3.19e-01 | 89.8% | 46.1% |
| 3739446 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.54 | 45.0 | 4.43e-01 | 95.5% | 92.6% |
| 5055108 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.52 | 46.0 | 3.16e-01 | 97.7% | 29.2% |
| 4956928 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 44.0 | 3.42e-01 | 95.5% | 69.3% |
| 4182578 | 4252.1.1.5 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › Svf1 | 0.52 | 45.0 | 3.53e-01 | 95.5% | 80.7% |
| 4254174 | 4099.1.1.22 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P | 0.52 | 44.0 | 3.78e-01 | 95.5% | 63.4% |
| 3206580 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.50 | 39.0 | 3.44e-01 | 89.8% | 84.0% |