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pre3_saliva_scaffold_18_prodigal-single.1__X__X__00145
Bact-Virpre3_saliva_scaffold_18_prodigal-single.1__X__X__00145
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-71
Domain cluster:
representative
CATH (77)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.95 | 86.0 | 8.34e-01 | 100.0% | 87.7% |
| 3na7A00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.95 | 85.0 | 5.59e-01 | 100.0% | 27.0% |
| 2r9iA00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.93 | 77.0 | 7.58e-01 | 92.6% | 83.1% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.92 | 83.0 | 7.36e-01 | 100.0% | 70.7% |
| 3vkgA12 | 1.10.287.2610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.92 | 87.0 | 5.87e-01 | 100.0% | 64.2% |
| 5z7qA00 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.92 | 87.0 | 6.18e-01 | 100.0% | 85.8% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.91 | 71.0 | 6.86e-01 | 88.2% | 74.3% |
| 2pmsC00 | 6.10.140.920 | Special › Helix non-globular › Helix Hairpins › | 0.91 | 84.0 | 6.96e-01 | 100.0% | 60.6% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.91 | 73.0 | 7.90e-01 | 89.7% | 100.0% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.91 | 85.0 | 5.64e-01 | 100.0% | 45.3% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.90 | 77.0 | 7.42e-01 | 95.6% | 80.3% |
| 2dw4A03 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.90 | 85.0 | 7.30e-01 | 100.0% | 71.3% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.90 | 81.0 | 7.41e-01 | 100.0% | 75.6% |
| 2lm9A00 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.90 | 80.0 | 7.04e-01 | 100.0% | 67.7% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.90 | 79.0 | 8.21e-01 | 98.5% | 100.0% |
| 1x8zB00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.89 | 78.0 | 5.93e-01 | 100.0% | 43.5% |
| 4wpeA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.89 | 78.0 | 5.04e-01 | 100.0% | 23.3% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.89 | 80.0 | 8.10e-01 | 98.5% | 98.5% |
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.88 | 82.0 | 7.49e-01 | 100.0% | 80.2% |
| 2dq0A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.88 | 79.0 | 6.64e-01 | 100.0% | 60.7% |
| 4mtxD00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.88 | 77.0 | 6.74e-01 | 97.1% | 66.3% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.87 | 75.0 | 6.77e-01 | 98.5% | 69.2% |
| 4mh6A00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.87 | 80.0 | 5.95e-01 | 100.0% | 78.6% |
| 7sgrA02 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.86 | 79.0 | 5.00e-01 | 100.0% | 22.3% |
| 2p7vA00 | 1.20.120.1370 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Regulator of RNA polymerase sigma(70) subunit, domain 4 | 0.86 | 80.0 | 6.01e-01 | 100.0% | 45.0% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.86 | 79.0 | 7.47e-01 | 100.0% | 87.3% |
| 3vkgB06 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.86 | 73.0 | 4.78e-01 | 89.7% | 31.8% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.86 | 75.0 | 6.85e-01 | 94.1% | 93.1% |
| 2q12A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.86 | 78.0 | 5.21e-01 | 100.0% | 28.5% |
| 2jdiG01 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.85 | 68.0 | 7.16e-01 | 86.8% | 93.4% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.85 | 72.0 | 5.66e-01 | 98.5% | 45.9% |
| 1rq0A01 | 6.10.140.160 | Special › Helix non-globular › Helix Hairpins › | 0.85 | 74.0 | 6.85e-01 | 94.1% | 75.9% |
| 3cazB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.84 | 76.0 | 5.25e-01 | 100.0% | 31.9% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.84 | 75.0 | 6.56e-01 | 98.5% | 67.3% |
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.84 | 77.0 | 7.00e-01 | 100.0% | 97.7% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.84 | 76.0 | 7.36e-01 | 98.5% | 98.7% |
| 2hh7A00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.84 | 74.0 | 6.79e-01 | 95.6% | 75.3% |
| 3k29A00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.84 | 76.0 | 5.69e-01 | 100.0% | 77.0% |
| 4q4hA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.84 | 76.0 | 4.80e-01 | 100.0% | 21.4% |
| 4adzA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.84 | 71.0 | 6.41e-01 | 91.2% | 68.9% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.84 | 71.0 | 6.62e-01 | 91.2% | 100.0% |
| 2qf9A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.83 | 71.0 | 5.35e-01 | 95.6% | 40.4% |
| 4i0xG00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.83 | 73.0 | 7.33e-01 | 95.6% | 100.0% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.83 | 71.0 | 6.01e-01 | 92.6% | 62.0% |
| 5fmnA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.83 | 70.0 | 6.45e-01 | 91.2% | 72.1% |
| 2vs0A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.82 | 71.0 | 6.69e-01 | 94.1% | 97.6% |
| 4gzrB00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.82 | 75.0 | 7.20e-01 | 98.5% | 90.9% |
| 2g38B00 | 1.20.1260.20 | Mainly Alpha › Up-down Bundle › Ferritin › PPE superfamily | 0.82 | 75.0 | 5.48e-01 | 100.0% | 40.5% |
| 4mrsA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.82 | 73.0 | 4.61e-01 | 100.0% | 19.9% |
| 7wivA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.81 | 74.0 | 4.73e-01 | 100.0% | 22.5% |
| 3okqA00 | 1.20.58.1540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain | 0.81 | 73.0 | 5.96e-01 | 100.0% | 64.8% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.81 | 72.0 | 7.25e-01 | 97.1% | 100.0% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.80 | 72.0 | 6.64e-01 | 98.5% | 82.4% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 64.0 | 6.16e-01 | 85.3% | 76.3% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.79 | 62.0 | 6.55e-01 | 100.0% | 96.7% |
| 3pltA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.79 | 70.0 | 4.90e-01 | 100.0% | 31.3% |
| 2dnxA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.79 | 70.0 | 5.66e-01 | 100.0% | 54.6% |
| 2yevC00 | 6.10.280.110 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.78 | 64.0 | 6.62e-01 | 94.1% | 96.8% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.78 | 63.0 | 6.54e-01 | 89.7% | 100.0% |
| 3zciA00 | 1.20.58.1660 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 69.0 | 4.97e-01 | 100.0% | 35.6% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 68.0 | 6.76e-01 | 100.0% | 98.6% |
| 4dciA00 | 6.10.140.1110 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 69.0 | 5.29e-01 | 100.0% | 46.3% |
| 1k04A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.76 | 65.0 | 5.69e-01 | 97.1% | 68.3% |
| 3zbhA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.75 | 65.0 | 6.01e-01 | 100.0% | 86.7% |
| 4biuE01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.74 | 65.0 | 5.82e-01 | 100.0% | 69.4% |
| 3vbbE01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.74 | 64.0 | 5.42e-01 | 100.0% | 69.7% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.74 | 64.0 | 5.92e-01 | 100.0% | 80.0% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.73 | 63.0 | 4.99e-01 | 100.0% | 46.9% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.72 | 56.0 | 4.77e-01 | 83.8% | 100.0% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.71 | 61.0 | 5.00e-01 | 100.0% | 51.1% |
| 3syvA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.71 | 62.0 | 4.27e-01 | 100.0% | 41.6% |
| 1sg2A00 | 3.30.910.20 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain | 0.71 | 60.0 | 4.90e-01 | 100.0% | 50.4% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.70 | 59.0 | 5.98e-01 | 100.0% | 100.0% |
| 4id0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.69 | 57.0 | 4.96e-01 | 100.0% | 58.0% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 54.0 | 5.59e-01 | 100.0% | 95.4% |
| 2uv8A07 | 6.10.140.1410 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 54.0 | 5.06e-01 | 94.1% | 82.4% |
| 2vkzA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.63 | 56.0 | 3.75e-01 | 98.5% | 85.1% |
ECOD (89)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3464011 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.95 | 91.0 | 5.34e-01 | 100.0% | 15.8% |
| 3297770 | 622.4.1.26 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › HisKA | 0.95 | 85.0 | 7.75e-01 | 100.0% | 75.3% |
| 4543996 | 3600.1.1.1 ↗ | alpha bundles › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › uncharacterized protein SYNW0670 › YlqD | 0.95 | 91.0 | 7.59e-01 | 100.0% | 64.8% |
| 3376789 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.94 | 90.0 | 5.29e-01 | 100.0% | 15.5% |
| 3310861 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.94 | 90.0 | 5.36e-01 | 100.0% | 17.0% |
| 3465330 | 4177.1.1.11 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › DUF632 | 0.94 | 90.0 | 6.43e-01 | 100.0% | 40.0% |
| 3435096 | 192.29.1.216 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF632 | 0.94 | 90.0 | 7.19e-01 | 100.0% | 56.7% |
| 3468199 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.94 | 90.0 | 5.43e-01 | 100.0% | 18.9% |
| 3660998 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.94 | 90.0 | 5.26e-01 | 100.0% | 15.3% |
| 3256502 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.94 | 90.0 | 5.93e-01 | 100.0% | 29.6% |
| 3304475 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.94 | 90.0 | 5.23e-01 | 100.0% | 14.8% |
| 3654714 | 5086.1.1.89 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › KIF21A_4th | 0.94 | 90.0 | 6.16e-01 | 100.0% | 34.9% |
| 3834594 | 601.27.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like › DUF632, DUF630 | 0.94 | 89.0 | 6.56e-01 | 100.0% | 43.9% |
| 4446057 | 192.8.1.345 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PF30463 | 0.94 | 90.0 | 6.02e-01 | 100.0% | 31.9% |
| 3677905 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.94 | 89.0 | 5.37e-01 | 100.0% | 18.4% |
| 3379135 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.94 | 89.0 | 5.26e-01 | 100.0% | 16.2% |
| 3739176 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.94 | 89.0 | 5.17e-01 | 100.0% | 14.3% |
| 3681524 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.93 | 89.0 | 5.28e-01 | 100.0% | 16.8% |
| 3605626 | 192.12.1.0 ↗ | alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM | 0.93 | 89.0 | 7.46e-01 | 100.0% | 64.8% |
| 3805996 | 192.10.1.7 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › HisKA | 0.93 | 85.0 | 8.19e-01 | 100.0% | 86.7% |
| 3682989 | 5086.1.1.96 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF632 | 0.93 | 89.0 | 6.66e-01 | 100.0% | 46.9% |
| 3705783 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.93 | 89.0 | 7.90e-01 | 100.0% | 75.6% |
| 4993050 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.93 | 89.0 | 6.01e-01 | 100.0% | 89.5% |
| 3683632 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.93 | 89.0 | 6.11e-01 | 100.0% | 34.9% |
| 3073109 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.93 | 89.0 | 8.59e-01 | 100.0% | 91.9% |
| 3718408 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.93 | 88.0 | 7.28e-01 | 100.0% | 61.8% |
| 3382512 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.93 | 88.0 | 5.16e-01 | 100.0% | 15.3% |
| 3368370 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.93 | 88.0 | 5.21e-01 | 100.0% | 16.6% |
| 5006401 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.93 | 88.0 | 6.62e-01 | 100.0% | 46.9% |
| 3339157 | 3755.3.1.370 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF632 | 0.93 | 88.0 | 7.25e-01 | 100.0% | 61.8% |
| 4936790 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.92 | 88.0 | 7.38e-01 | 100.0% | 84.8% |
| 3326008 | 5086.1.1.96 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF632 | 0.92 | 88.0 | 7.50e-01 | 100.0% | 68.0% |
| 4479398 | 3755.1.1.8 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › FliJ | 0.92 | 88.0 | 6.58e-01 | 100.0% | 46.9% |
| 3376449 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.92 | 87.0 | 5.51e-01 | 100.0% | 23.4% |
| 5036054 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.92 | 88.0 | 5.12e-01 | 100.0% | 14.8% |
| 3831005 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.92 | 87.0 | 5.18e-01 | 100.0% | 17.4% |
| 3916884 | 192.29.1.1 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom | 0.92 | 83.0 | 8.52e-01 | 95.6% | 100.0% |
| 3413926 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.91 | 87.0 | 5.57e-01 | 100.0% | 25.7% |
| 3837491 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.91 | 86.0 | 5.02e-01 | 100.0% | 14.7% |
| 3443143 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.91 | 86.0 | 6.13e-01 | 100.0% | 46.9% |
| 3843241 | 108.1.1.25 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4 | 0.91 | 86.0 | 5.53e-01 | 100.0% | 26.2% |
| 3685099 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.91 | 82.0 | 8.38e-01 | 100.0% | 100.0% |
| 3278037 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.91 | 84.0 | 5.85e-01 | 98.5% | 34.4% |
| 3390311 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.91 | 85.0 | 7.09e-01 | 100.0% | 61.8% |
| 3382811 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.91 | 85.0 | 5.05e-01 | 100.0% | 16.0% |
| 3197615 | 3755.3.1.355 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Uds1 | 0.91 | 85.0 | 6.74e-01 | 100.0% | 57.6% |
| 4999286 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.91 | 86.0 | 6.06e-01 | 100.0% | 37.8% |
| 3657671 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.91 | 85.0 | 5.08e-01 | 100.0% | 17.0% |
| 3610428 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.90 | 85.0 | 7.99e-01 | 100.0% | 85.0% |
| 4428739 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.90 | 85.0 | 5.48e-01 | 100.0% | 25.7% |
| 4031582 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.90 | 85.0 | 5.85e-01 | 100.0% | 34.0% |
| 3628260 | 11.2.1.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › Anillin | 0.90 | 84.0 | 5.62e-01 | 100.0% | 30.2% |
| 3178900 | 192.2.1.30 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Uds1 | 0.90 | 84.0 | 6.34e-01 | 100.0% | 49.7% |
| 3935107 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.89 | 84.0 | 6.96e-01 | 100.0% | 61.8% |
| 4311405 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.89 | 83.0 | 6.08e-01 | 98.5% | 68.1% |
| 3402492 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.89 | 83.0 | 5.61e-01 | 100.0% | 32.1% |
| 3598650 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.89 | 83.0 | 7.30e-01 | 100.0% | 78.9% |
| 3715404 | 3939.1.1.0 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain | 0.89 | 82.0 | 4.89e-01 | 100.0% | 22.8% |
| 5072280 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.89 | 82.0 | 5.59e-01 | 100.0% | 31.6% |
| 3731364 | 3922.1.1.137 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › HisKA | 0.88 | 77.0 | 7.93e-01 | 98.5% | 98.5% |
| 4019969 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.88 | 78.0 | 4.97e-01 | 100.0% | 22.0% |
| 3593427 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.88 | 83.0 | 6.13e-01 | 100.0% | 67.1% |
| 3615471 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.88 | 82.0 | 6.84e-01 | 100.0% | 61.8% |
| 4665988 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.88 | 82.0 | 6.96e-01 | 100.0% | 71.4% |
| 3932987 | 4177.1.1.10 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › GMIP-like_FCH | 0.88 | 81.0 | 5.27e-01 | 100.0% | 25.7% |
| 3482273 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.88 | 81.0 | 6.81e-01 | 100.0% | 62.4% |
| 3782889 | 4177.1.1.5 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 | 0.88 | 81.0 | 5.54e-01 | 100.0% | 31.6% |
| 3928077 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.88 | 82.0 | 6.22e-01 | 100.0% | 52.4% |
| 4024105 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.87 | 82.0 | 5.24e-01 | 100.0% | 48.7% |
| 4959927 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.87 | 77.0 | 5.57e-01 | 94.1% | 37.6% |
| 3281879 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.87 | 80.0 | 5.69e-01 | 98.5% | 37.2% |
| 4286404 | 3755.1.1.14 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › T3SSipB | 0.87 | 79.0 | 5.70e-01 | 100.0% | 37.8% |
| 5007128 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.86 | 81.0 | 4.95e-01 | 100.0% | 33.1% |
| 3408532 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.86 | 80.0 | 5.82e-01 | 100.0% | 40.0% |
| 3489372 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.86 | 79.0 | 5.30e-01 | 100.0% | 28.9% |
| 3249317 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.85 | 80.0 | 5.87e-01 | 100.0% | 73.1% |
| 2075294 | 3712.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 | 0.83 | 74.0 | 6.47e-01 | 98.5% | 66.7% |
| 4145109 | 3922.1.1.264 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PF30340 | 0.83 | 76.0 | 4.71e-01 | 100.0% | 25.8% |
| 4806319 | 3755.1.1.2 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › YscO-like | 0.83 | 74.0 | 6.96e-01 | 100.0% | 81.9% |
| 3930016 | 5001.1.1.27 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Sre | 0.81 | 73.0 | 4.79e-01 | 100.0% | 33.0% |
| 4375453 | 622.4.1.26 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › HisKA | 0.81 | 70.0 | 6.85e-01 | 97.1% | 92.0% |
| 3609435 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.80 | 73.0 | 6.63e-01 | 100.0% | 76.7% |
| 5008718 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.80 | 71.0 | 4.28e-01 | 100.0% | 32.2% |
| 5009131 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.79 | 70.0 | 5.27e-01 | 100.0% | 41.8% |
| 3574609 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.76 | 66.0 | 4.85e-01 | 100.0% | 36.3% |
| 3402026 | 2004.1.1.199 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B | 0.76 | 67.0 | 3.96e-01 | 100.0% | 13.8% |
| 4102446 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.70 | 61.0 | 4.42e-01 | 100.0% | 33.2% |
| 3641389 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.70 | 60.0 | 3.77e-01 | 100.0% | 16.4% |
| 3971002 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.67 | 57.0 | 5.54e-01 | 97.1% | 88.0% |
D2
high
residues 76-204
Domain cluster:
rep: pre3_saliva_scaffold_18_prodigal-single.1__X__X__00138__D69-193
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zfnA02 | 2.30.140.40 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain | 0.65 | 25.0 | 3.65e-01 | 87.6% | 78.9% |
| 6x4tA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 33.0 | 3.96e-01 | 93.8% | 81.2% |
| 1hk6A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 32.0 | 3.68e-01 | 99.2% | 69.5% |
| 1ee8A01 | 3.20.190.10 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal | 0.59 | 35.0 | 3.66e-01 | 89.1% | 62.5% |
| 3c6kA01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.55 | 28.0 | 3.28e-01 | 94.6% | 68.1% |
| 1eerC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 32.0 | 3.61e-01 | 96.9% | 76.3% |
| 3udfA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 30.0 | 3.45e-01 | 91.5% | 76.8% |
| 4lg8A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 32.0 | 2.50e-01 | 100.0% | 25.2% |
| 2wkkA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 42.0 | 4.04e-01 | 93.8% | 77.3% |
| 2gprA00 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.50 | 43.0 | 4.07e-01 | 93.0% | 88.3% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4174628 | 3816.1.1.1 ↗ | beta barrels › Polymyxin B resistance protein › Polymyxin B resistance protein › Polymyxin B resistance protein › PmrD | 0.67 | 38.0 | 4.59e-01 | 86.0% | 87.5% |
| 5037590 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 34.0 | 4.28e-01 | 98.4% | 85.3% |
| 4982968 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 35.0 | 4.18e-01 | 99.2% | 82.4% |
| 1099835 | 77.1.1.1 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 | 0.61 | 29.0 | 3.24e-01 | 93.8% | 54.7% |
| 4937919 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 32.0 | 3.75e-01 | 96.9% | 78.8% |
| 3851567 | 11.1.1.334 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TSLPR_D1 | 0.54 | 30.0 | 3.40e-01 | 96.9% | 70.5% |
| 3587651 | 325.1.6.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PTS_EIIA_1 | 0.51 | 44.0 | 4.26e-01 | 93.0% | 91.0% |
| 4004517 | 11.1.1.1138 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29285 | 0.51 | 33.0 | 3.88e-01 | 95.3% | 97.6% |
| 4952518 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.51 | 31.0 | 3.40e-01 | 97.7% | 72.7% |
| 3393502 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 30.0 | 3.44e-01 | 87.6% | 80.0% |
| 3853561 | 11.1.1.363 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 | 0.50 | 34.0 | 4.02e-01 | 94.6% | 100.0% |
| 3509066 | 325.1.6.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PTS_EIIA_1 | 0.50 | 44.0 | 4.17e-01 | 93.8% | 91.3% |
| 3939128 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 34.0 | 3.65e-01 | 86.0% | 81.8% |