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pre3_saliva_scaffold_18_prodigal-single.1__X__X__00192

Bact-Vir

pre3_saliva_scaffold_18_prodigal-single.1__X__X__00192

Identity

Kingdom:
phage

Quality

68.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-91
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ia2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 50.0 5.51e-01 80.0% 88.2%
3mq0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 51.0 5.31e-01 81.2% 79.2%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 47.0 4.65e-01 90.6% 62.2%
2o0yB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 51.0 5.77e-01 82.4% 95.4%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 50.0 5.29e-01 81.2% 80.3%
3majA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 46.0 5.34e-01 83.5% 93.3%
3dpuA03 1.10.10.2200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 53.0 5.64e-01 78.8% 89.3%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 51.0 5.33e-01 76.5% 87.3%
1u5tB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 52.0 5.25e-01 78.8% 98.8%
2r3sB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 4.96e-01 77.6% 76.5%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 5.64e-01 94.1% 88.4%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 4.08e-01 75.3% 51.7%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 44.0 4.86e-01 77.6% 85.1%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 4.85e-01 77.6% 72.3%
1ucrB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 5.14e-01 75.3% 86.7%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 4.00e-01 76.5% 46.5%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 5.04e-01 96.5% 73.7%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 5.08e-01 87.1% 82.5%
1cf7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 5.20e-01 83.5% 95.5%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 48.0 4.91e-01 81.2% 80.2%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 5.15e-01 87.1% 86.3%
3bwgB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 5.15e-01 81.2% 94.2%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 4.94e-01 78.8% 86.6%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 4.42e-01 90.6% 55.0%
1wj5A01 1.10.10.980 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain 0.64 50.0 4.77e-01 83.5% 98.0%
2hs5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 5.06e-01 80.0% 95.5%
3fx3B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 4.75e-01 94.1% 75.8%
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 44.0 4.95e-01 82.4% 96.9%
3by6C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 5.01e-01 83.5% 89.6%
2mtfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 4.15e-01 77.6% 71.9%
4p9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 4.94e-01 81.2% 97.0%
4bgdA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 4.85e-01 84.7% 100.0%
6qv3A05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.60e-01 82.4% 92.5%
2krhA00 1.10.10.1540 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain 0.61 51.0 5.18e-01 100.0% 91.8%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.97e-01 87.1% 95.9%
1zoyD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.57 40.0 3.81e-01 72.9% 74.5%
3dwbA01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.57 48.0 3.37e-01 97.6% 64.4%
4kx7A04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.57 47.0 3.19e-01 97.6% 24.1%
3c7jA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 4.30e-01 87.1% 78.0%
4fymF00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 48.0 3.66e-01 97.6% 49.8%
8amzT01 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 46.0 3.28e-01 92.9% 45.8%
2rsxA00 3.10.450.420 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 3.47e-01 85.9% 52.8%
5ljmA00 1.20.58.2190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 44.0 3.46e-01 100.0% 60.1%
2looA02 1.10.10.1740 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like 0.50 38.0 3.96e-01 82.4% 92.0%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3583168 101.1.2.490 alpha arrays › HTH › HTH › winged helix domain › WHD_CHMP7 0.83 62.0 5.61e-01 77.6% 67.3%
3998171 101.1.2.490 alpha arrays › HTH › HTH › winged helix domain › WHD_CHMP7 0.83 61.0 6.46e-01 76.5% 98.7%
3797719 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 62.0 5.54e-01 80.0% 67.0%
3392391 101.1.2.397 alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 0.79 60.0 6.35e-01 78.8% 89.3%
3710117 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 54.0 5.33e-01 78.8% 66.7%
5049535 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 56.0 5.79e-01 91.8% 78.8%
5064454 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 52.0 4.99e-01 91.8% 61.1%
3812553 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.77 55.0 4.55e-01 96.5% 45.0%
3895346 101.1.2.575 alpha arrays › HTH › HTH › winged helix domain › PF25894 0.76 69.0 6.25e-01 100.0% 75.5%
3825507 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 55.0 3.28e-01 100.0% 12.4%
142831 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.73 51.0 5.26e-01 81.2% 77.2%
3874006 101.1.2.575 alpha arrays › HTH › HTH › winged helix domain › PF25894 0.73 65.0 5.29e-01 96.5% 86.0%
3805839 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.72 55.0 5.52e-01 100.0% 80.0%
4643653 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 52.0 5.57e-01 76.5% 100.0%
4240304 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.71 54.0 5.46e-01 100.0% 80.0%
4971766 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 48.0 4.54e-01 96.5% 58.3%
4931665 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 51.0 5.42e-01 81.2% 86.7%
5031834 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 57.0 5.60e-01 96.5% 81.1%
3304578 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 53.0 3.22e-01 97.6% 13.0%
5071075 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.70 46.0 4.68e-01 96.5% 68.2%
3337440 101.1.2.497 alpha arrays › HTH › HTH › winged helix domain › PF25874 0.69 52.0 5.27e-01 81.2% 92.9%
4948782 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.69 46.0 4.91e-01 96.5% 78.7%
3407920 101.1.2.73 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82 0.69 63.0 5.96e-01 100.0% 94.0%
4999062 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.69 46.0 4.43e-01 77.6% 61.1%
3874466 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 51.0 5.24e-01 78.8% 85.0%
3778534 101.1.2.45 alpha arrays › HTH › HTH › winged helix domain › SAC3_GANP 0.68 47.0 4.59e-01 78.8% 65.3%
2329747 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 48.0 4.75e-01 77.6% 69.6%
3295884 101.1.2.132 alpha arrays › HTH › HTH › winged helix domain › DUF3591 0.67 52.0 5.21e-01 87.1% 82.4%
1891444 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 48.0 4.39e-01 77.6% 58.7%
4484914 101.1.2.771 alpha arrays › HTH › HTH › winged helix domain › DNA_methylase 0.66 56.0 4.26e-01 100.0% 40.5%
3824278 101.1.2.132 alpha arrays › HTH › HTH › winged helix domain › DUF3591 0.66 51.0 5.11e-01 82.4% 82.4%
4160566 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 5.71e-01 100.0% 96.2%
3602011 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 57.0 4.61e-01 97.6% 78.2%
3935822 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.65 52.0 5.14e-01 85.9% 84.4%
3387885 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 46.0 5.07e-01 81.2% 96.9%
5038669 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.65 46.0 4.23e-01 77.6% 55.7%
4859443 101.1.2.393 alpha arrays › HTH › HTH › winged helix domain › WH_MCM2 0.64 53.0 5.18e-01 89.4% 83.5%
4425756 101.1.2.764 alpha arrays › HTH › HTH › winged helix domain › RP-C 0.64 59.0 4.90e-01 100.0% 71.0%
3357775 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.64 54.0 5.30e-01 100.0% 83.3%
4122063 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 47.0 4.12e-01 88.2% 52.8%
3230873 101.1.2.97 alpha arrays › HTH › HTH › winged helix domain › RPA_C 0.64 47.0 5.16e-01 87.1% 98.5%
3509319 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 46.0 4.10e-01 78.8% 85.4%
3333468 101.1.2.122 alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.63 44.0 4.32e-01 87.1% 66.3%
5072542 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.63 50.0 3.29e-01 85.9% 39.7%
3669878 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 56.0 5.56e-01 100.0% 96.7%
4378586 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.62 45.0 4.74e-01 81.2% 88.0%
4015273 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.60 44.0 4.26e-01 77.6% 69.5%
5000814 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 43.0 4.67e-01 82.4% 98.5%
3518638 101.1.2.132 alpha arrays › HTH › HTH › winged helix domain › DUF3591 0.60 48.0 4.67e-01 88.2% 83.2%
3580220 108.1.1.103 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6, EF-hand_7, EF-hand_8 0.60 44.0 3.48e-01 78.8% 37.2%
5035908 3896.1.2.0 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-archaeol synthase 0.59 47.0 3.83e-01 89.4% 82.9%
119496 505.1.1.1 alpha arrays › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › Repressor of bacterial conjugation FinO › ProQ 0.58 45.0 4.05e-01 84.7% 66.4%
3522076 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 42.0 4.42e-01 78.8% 93.3%
4961792 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 50.0 5.09e-01 97.6% 100.0%
5054741 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.57 44.0 4.10e-01 84.7% 71.8%
3225535 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 45.0 4.34e-01 88.2% 80.0%
3597777 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 44.0 3.70e-01 83.5% 57.3%
3971213 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.57 42.0 4.50e-01 80.0% 94.7%
3596134 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 42.0 3.04e-01 81.2% 29.6%
3174642 109.4.1.3141 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29002 0.54 46.0 3.53e-01 95.3% 63.5%