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pre3_saliva_scaffold_18_prodigal-single.1__X__X__00211
Bact-Virpre3_saliva_scaffold_18_prodigal-single.1__X__X__00211
Identity
- Kingdom:
- phage
Quality
67.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-169
D2
high
residues 253-279_374-506
Domain cluster:
rep: JF974305__AGF91207.1__HAPG-00021__00021__D140-317
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8b55A01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.78 | 72.0 | 6.94e-01 | 100.0% | 86.6% |
| 4pbpA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.78 | 74.0 | 6.70e-01 | 100.0% | 83.5% |
| 2wjsA03 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 60.0 | 6.03e-01 | 100.0% | 82.6% |
| 5xrkA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 56.0 | 5.99e-01 | 83.7% | 96.5% |
| 6aiiA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 56.0 | 4.36e-01 | 83.7% | 66.1% |
| 1umzA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 57.0 | 4.76e-01 | 86.3% | 71.2% |
| 5mc9A02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 63.0 | 6.05e-01 | 100.0% | 84.6% |
| 2wjsA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 64.0 | 6.07e-01 | 100.0% | 85.2% |
| 3sh4A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 65.0 | 6.01e-01 | 100.0% | 84.6% |
| 2wsuA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 54.0 | 5.77e-01 | 96.9% | 95.0% |
| 5jowA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 54.0 | 5.00e-01 | 83.1% | 75.0% |
| 1qu0C00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 63.0 | 5.98e-01 | 100.0% | 85.2% |
| 1ikpA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 63.0 | 5.58e-01 | 100.0% | 99.1% |
| 3zypA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.68 | 58.0 | 5.24e-01 | 91.3% | 75.6% |
| 2jd4A02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 60.0 | 5.77e-01 | 100.0% | 85.8% |
| 2bvbA00 | 2.60.120.710 | Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 | 0.67 | 51.0 | 5.46e-01 | 98.8% | 93.4% |
| 2a5zA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 60.0 | 5.19e-01 | 96.2% | 77.8% |
| 1d2sA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 58.0 | 5.75e-01 | 100.0% | 90.6% |
| 1pz7A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 60.0 | 5.69e-01 | 100.0% | 84.6% |
| 5vxzA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 58.0 | 5.48e-01 | 100.0% | 80.3% |
| 4hfsA00 | 2.60.120.1270 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 58.0 | 5.33e-01 | 100.0% | 91.1% |
| 1s2kA00 | 2.60.120.700 | Mainly Beta › Sandwich › Jelly Rolls › Peptidase G1 | 0.59 | 54.0 | 5.04e-01 | 100.0% | 93.5% |
| 1xf8A02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 38.0 | 3.76e-01 | 85.6% | 63.6% |
| 4fx5A01 | 2.60.40.3670 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 37.0 | 3.89e-01 | 100.0% | 73.9% |
| 5fuiA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 37.0 | 4.16e-01 | 82.5% | 90.3% |
| 6qp7A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 42.0 | 3.03e-01 | 84.4% | 43.1% |
| 2hboA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 36.0 | 3.89e-01 | 70.6% | 94.0% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4999349 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.81 | 77.0 | 7.01e-01 | 100.0% | 81.5% |
| 3277345 | 7512.1.1.4 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_10 | 0.80 | 75.0 | 5.36e-01 | 100.0% | 37.4% |
| 3251374 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.79 | 75.0 | 6.43e-01 | 100.0% | 82.1% |
| 3244250 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.79 | 75.0 | 6.19e-01 | 100.0% | 77.0% |
| 3994222 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.79 | 60.0 | 5.51e-01 | 100.0% | 62.5% |
| 3727852 | 10.1.1.19 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_leg-like | 0.79 | 63.0 | 5.32e-01 | 83.7% | 71.8% |
| 4861505 | 10.1.1.5 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin | 0.78 | 75.0 | 7.05e-01 | 100.0% | 90.9% |
| 2982808 | 10.1.1.5 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin | 0.78 | 72.0 | 6.73e-01 | 100.0% | 80.3% |
| 3174990 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.78 | 74.0 | 6.67e-01 | 100.0% | 77.6% |
| 3625623 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.78 | 59.0 | 6.15e-01 | 100.0% | 84.0% |
| 3969667 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.78 | 69.0 | 6.03e-01 | 92.5% | 75.1% |
| 3901788 | 10.1.1.1 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 | 0.78 | 63.0 | 6.23e-01 | 100.0% | 81.2% |
| 3710430 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.77 | 70.0 | 6.82e-01 | 100.0% | 88.0% |
| 5034412 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.76 | 63.0 | 5.84e-01 | 94.4% | 69.7% |
| 3191595 | 10.1.1.11 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 | 0.76 | 62.0 | 5.34e-01 | 84.4% | 65.5% |
| 135304 | 10.1.1.1 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 | 0.75 | 60.0 | 6.06e-01 | 100.0% | 83.6% |
| 4015056 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.73 | 58.0 | 4.81e-01 | 82.5% | 70.5% |
| 5061086 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.73 | 61.0 | 5.62e-01 | 87.5% | 73.5% |
| 4978098 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.73 | 59.0 | 5.64e-01 | 83.7% | 89.4% |
| 3520167 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.72 | 61.0 | 6.03e-01 | 100.0% | 84.8% |
| 5013680 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.72 | 58.0 | 5.45e-01 | 83.7% | 94.7% |
| 3929950 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.72 | 63.0 | 6.15e-01 | 100.0% | 86.5% |
| 3239985 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.71 | 60.0 | 5.42e-01 | 100.0% | 68.1% |
| 3901785 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.70 | 60.0 | 5.49e-01 | 100.0% | 70.2% |
| 3505970 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.70 | 61.0 | 5.11e-01 | 92.5% | 64.2% |
| 3997908 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.67 | 62.0 | 5.91e-01 | 100.0% | 85.6% |
| 3474631 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.67 | 60.0 | 5.79e-01 | 100.0% | 85.0% |
| 3402726 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.67 | 60.0 | 5.42e-01 | 100.0% | 71.9% |
| 3582226 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.67 | 62.0 | 5.65e-01 | 100.0% | 84.3% |
| 158488 | 10.1.1.33 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TgMIC1 | 0.67 | 51.0 | 5.46e-01 | 98.8% | 93.4% |
| 1117 | 10.1.1.52 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SO2946-like_C | 0.67 | 60.0 | 5.19e-01 | 96.2% | 77.8% |
| 3800238 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.66 | 62.0 | 5.43e-01 | 100.0% | 77.0% |
| 3511755 | 10.1.1.1 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 | 0.66 | 62.0 | 5.94e-01 | 100.0% | 87.8% |
| 3903929 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.65 | 59.0 | 5.70e-01 | 100.0% | 87.4% |
| 3215162 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.65 | 61.0 | 5.79e-01 | 100.0% | 88.1% |
| 3704753 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.65 | 60.0 | 5.22e-01 | 100.0% | 75.8% |
| 3903925 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.65 | 59.0 | 5.66e-01 | 100.0% | 85.6% |
| 3178885 | 10.1.1.16 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Peptidase_A4 | 0.64 | 59.0 | 5.37e-01 | 100.0% | 93.8% |
| 4021243 | 10.1.1.16 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Peptidase_A4 | 0.63 | 57.0 | 5.13e-01 | 100.0% | 88.4% |
| 3901784 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.61 | 53.0 | 5.34e-01 | 100.0% | 93.1% |
| 3799730 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.61 | 56.0 | 5.20e-01 | 100.0% | 81.0% |
| 3250629 | 4210.1.1.1 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › WGR | 0.56 | 31.0 | 3.76e-01 | 86.9% | 81.0% |
| 3670446 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.52 | 46.0 | 3.67e-01 | 95.0% | 88.1% |
| 3329666 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.52 | 47.0 | 3.54e-01 | 100.0% | 88.2% |
| 4104949 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.51 | 31.0 | 3.75e-01 | 86.3% | 93.3% |
| 4274290 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.50 | 45.0 | 3.70e-01 | 100.0% | 91.1% |
D3
high
residues 293-371
D4
medium
residues 201-252
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zihC00 | 1.10.3630.10 | Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like | 0.59 | 42.0 | 2.71e-01 | 78.8% | 30.5% |
| 4ekuA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 41.0 | 3.30e-01 | 84.6% | 68.4% |
| 2v4jB03 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 39.0 | 3.74e-01 | 96.2% | 63.1% |
| 6xw5A01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.50 | 36.0 | 2.63e-01 | 80.8% | 95.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3797522 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 42.0 | 3.57e-01 | 96.2% | 45.0% |
| 5052204 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.54 | 39.0 | 3.48e-01 | 94.2% | 50.6% |
| 5036146 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 44.0 | 4.13e-01 | 100.0% | 82.9% |
| 4971941 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.52 | 42.0 | 3.86e-01 | 96.2% | 66.7% |
| 3307915 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.52 | 35.0 | 3.31e-01 | 71.2% | 75.4% |
| 4954770 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 36.0 | 2.60e-01 | 80.8% | 61.0% |
| 5009929 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.50 | 41.0 | 3.16e-01 | 100.0% | 67.9% |