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pre3_saliva_scaffold_18_prodigal-single.1__X__X__00219

Bact-Vir

pre3_saliva_scaffold_18_prodigal-single.1__X__X__00219

Identity

Kingdom:
phage

Quality

54.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 163-219
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12323.15 best HTH_OrfB_IS605 50.5 1.50e-13 66.7% 76.6%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mh3A00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.63 48.0 4.48e-01 82.5% 91.4%
3gr3A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.60 40.0 2.70e-01 71.9% 17.7%
4ydeB00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.56 44.0 2.68e-01 93.0% 79.8%
3h8lA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 40.0 3.02e-01 84.2% 61.6%
2jbrA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.52 35.0 2.92e-01 78.9% 35.3%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4532389 4126.1.1.6 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA 0.72 53.0 2.99e-01 80.7% 75.1%
4971062 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.69 53.0 4.57e-01 80.7% 62.4%
2325180 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.52 37.0 3.20e-01 80.7% 55.8%