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pre3_saliva_scaffold_3_prodigal-single.1__X__X__00030

Bact-Vir

pre3_saliva_scaffold_3_prodigal-single.1__X__X__00030

Identity

Kingdom:
phage

Quality

51.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-70
PDB
D2 high residues 94-115_152-293
PDB
D3 high residues 304-451
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.66 27.0 3.81e-01 85.8% 78.3%
1qnaA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.63 26.0 3.28e-01 85.8% 61.3%
1aisA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.63 26.0 3.30e-01 85.8% 63.2%
1cdwA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.62 25.0 3.29e-01 85.8% 64.0%
3qybA02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.59 36.0 4.38e-01 85.8% 96.8%
5tkwA02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.55 24.0 3.51e-01 77.0% 90.9%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.55 34.0 3.72e-01 100.0% 72.2%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 39.0 3.10e-01 75.0% 75.5%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 26.0 3.20e-01 81.1% 70.7%
8djfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 39.0 3.20e-01 75.7% 59.4%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 40.0 3.18e-01 83.1% 50.7%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4656512 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.64 28.0 4.16e-01 84.5% 98.3%
5067909 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.63 28.0 3.64e-01 85.8% 71.8%
3510576 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.63 26.0 3.54e-01 85.8% 71.2%
5051705 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.63 27.0 3.30e-01 85.8% 61.1%
5027198 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.63 26.0 2.99e-01 85.8% 50.9%
3242661 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.62 26.0 3.21e-01 85.8% 60.0%
4936584 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.62 26.0 3.24e-01 85.8% 60.0%
3407402 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.62 26.0 3.19e-01 85.8% 60.0%
3403222 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.61 27.0 2.79e-01 87.8% 43.6%
3601875 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.61 30.0 3.54e-01 87.2% 65.7%
3963561 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.59 28.0 3.90e-01 85.8% 92.9%
3717674 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.55 33.0 4.15e-01 91.2% 97.8%
3953823 881.1.1.35 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF25845 0.55 34.0 3.41e-01 93.9% 58.7%
4095609 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 36.0 3.77e-01 87.2% 70.7%
3170299 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.54 39.0 2.90e-01 75.0% 40.3%
3994699 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 39.0 3.02e-01 75.7% 44.7%
None — 0.53 39.0 2.83e-01 75.7% 37.6%
4003936 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 38.0 3.20e-01 74.3% 59.2%
3903012 109.54.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.53 39.0 2.68e-01 75.0% 34.3%
None — 0.53 38.0 2.88e-01 75.0% 47.2%
3630631 5.1.4.327 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_MABP1-WDR62_2nd 0.53 43.0 2.79e-01 89.2% 39.6%
3258352 5.1.4.284 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, EIF3I 0.52 38.0 2.95e-01 75.0% 70.6%
3908717 5.1.4.511 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF1088, NBCH_WD40 0.52 41.0 3.04e-01 83.8% 54.8%
3676555 5.1.11.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.52 43.0 2.81e-01 93.2% 50.3%
3743855 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 40.0 3.02e-01 83.1% 39.5%
3248668 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.51 26.0 3.44e-01 75.7% 90.0%
None — 0.50 38.0 2.80e-01 83.8% 30.4%