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pre3_saliva_scaffold_3_prodigal-single.1__X__X__00055

Bact-Vir

pre3_saliva_scaffold_3_prodigal-single.1__X__X__00055

Identity

Kingdom:
phage

Quality

86.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 30-170
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5hexA01 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.53 43.0 3.51e-01 88.7% 99.6%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4927459 3979.1.1.0 ↗ a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain 0.54 28.0 3.59e-01 77.3% 94.3%
4939811 3979.1.1.0 ↗ a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain 0.53 29.0 3.69e-01 78.7% 100.0%
3660797 7574.1.1.2 ↗ a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › E1_dh 0.52 37.0 3.86e-01 95.7% 80.8%
5049069 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.51 31.0 3.68e-01 87.9% 92.2%
3693859 2002.1.1.291 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TIM-barrel_MTC6 0.51 44.0 3.45e-01 97.2% 64.0%
D2 medium residues 171-309
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13306.13 best LRR_5 29.9 6.60e-07 71.9% 63.8%
PF03382.21 DUF285 47.5 2.00e-12 71.2% 69.2%