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pre3_saliva_scaffold_3_prodigal-single.1__X__X__00055
Bact-Virpre3_saliva_scaffold_3_prodigal-single.1__X__X__00055
Identity
- Kingdom:
- phage
Quality
86.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 30-170
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5hexA01 | 3.40.367.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › | 0.53 | 43.0 | 3.51e-01 | 88.7% | 99.6% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4927459 | 3979.1.1.0 ↗ | a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain | 0.54 | 28.0 | 3.59e-01 | 77.3% | 94.3% |
| 4939811 | 3979.1.1.0 ↗ | a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain | 0.53 | 29.0 | 3.69e-01 | 78.7% | 100.0% |
| 3660797 | 7574.1.1.2 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › E1_dh | 0.52 | 37.0 | 3.86e-01 | 95.7% | 80.8% |
| 5049069 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.51 | 31.0 | 3.68e-01 | 87.9% | 92.2% |
| 3693859 | 2002.1.1.291 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TIM-barrel_MTC6 | 0.51 | 44.0 | 3.45e-01 | 97.2% | 64.0% |
D2
medium
residues 171-309
Domain cluster:
rep: PHAGE-A10--js4906-27-5_S32_scaffold_40_curated_closed_complete_prodigal-single.1__X__X__00197__D6-109
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13306.13 best | LRR_5 | 29.9 | 6.60e-07 | 71.9% | 63.8% |
| PF03382.21 | DUF285 | 47.5 | 2.00e-12 | 71.2% | 69.2% |