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pre3_saliva_scaffold_3_prodigal-single.1__X__X__00078
Bact-Virpre3_saliva_scaffold_3_prodigal-single.1__X__X__00078
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-139
Domain cluster:
rep: term4_saliva_scaffold_12_prodigal-single.1__X__X__00175__D14-130
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.81 | 32.0 | 4.80e-01 | 100.0% | 81.8% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.67 | 48.0 | 5.36e-01 | 99.3% | 95.4% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.62 | 48.0 | 5.24e-01 | 99.3% | 99.1% |
| 8hdlA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.62 | 45.0 | 3.66e-01 | 94.9% | 41.9% |
| 3l39A01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.62 | 52.0 | 4.57e-01 | 100.0% | 61.0% |
| 1sknP00 | 1.10.880.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor Skn-1; Chain P › Transcription factor, Skn-1-like, DNA-binding domain | 0.59 | 27.0 | 3.58e-01 | 99.3% | 78.4% |
| 2q5zB00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.58 | 32.0 | 3.72e-01 | 98.5% | 76.6% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.56 | 44.0 | 4.34e-01 | 98.5% | 76.7% |
| 1uurA01 | 1.20.58.240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 | 0.55 | 40.0 | 4.38e-01 | 86.1% | 91.8% |
| 4i8oA02 | 3.30.160.690 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain | 0.54 | 33.0 | 3.83e-01 | 92.7% | 90.0% |
| 3x29A00 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.53 | 49.0 | 4.58e-01 | 100.0% | 96.4% |
| 5ojcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 46.0 | 4.49e-01 | 95.6% | 98.1% |
| 4p79A00 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.53 | 49.0 | 4.42e-01 | 100.0% | 91.7% |
| 4y97D00 | 1.10.3200.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger | 0.52 | 39.0 | 3.62e-01 | 78.8% | 100.0% |
| 1t98A02 | 1.20.58.590 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain | 0.50 | 40.0 | 3.77e-01 | 86.1% | 69.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4956279 | 633.13.1.1 ↗ | alpha bundles › Bromodomain-like › DsbB-like › DsbB-like › DsbB | 0.67 | 54.0 | 5.42e-01 | 100.0% | 82.9% |
| 3668980 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.67 | 57.0 | 5.77e-01 | 100.0% | 91.9% |
| 5035146 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.64 | 49.0 | 4.65e-01 | 100.0% | 66.7% |
| 4981252 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.63 | 36.0 | 4.58e-01 | 86.9% | 96.2% |
| 3786522 | 604.6.1.22 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › EMC4 | 0.63 | 41.0 | 4.57e-01 | 87.6% | 82.7% |
| 3393821 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.61 | 57.0 | 5.45e-01 | 100.0% | 87.7% |
| 4142273 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.59 | 39.0 | 3.68e-01 | 77.4% | 53.5% |
| 3913809 | 150.1.1.101 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › MARVEL | 0.59 | 54.0 | 5.23e-01 | 98.5% | 89.3% |
| 3941265 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.58 | 54.0 | 5.10e-01 | 100.0% | 91.3% |
| 3241279 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.57 | 51.0 | 4.94e-01 | 97.1% | 100.0% |
| 3787899 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.56 | 48.0 | 4.85e-01 | 93.4% | 99.3% |
| 3892906 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 44.0 | 2.85e-01 | 85.4% | 22.4% |
| 3914665 | 604.5.1.10 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › HRG | 0.55 | 48.0 | 4.74e-01 | 100.0% | 88.9% |
| 3248612 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.55 | 50.0 | 4.54e-01 | 100.0% | 94.6% |
| 3234981 | 633.23.1.4 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 | 0.54 | 50.0 | 4.32e-01 | 100.0% | 87.1% |
| 3282593 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.54 | 43.0 | 3.54e-01 | 82.5% | 72.9% |
| 3660599 | 5069.1.1.55 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF1218 | 0.53 | 38.0 | 3.61e-01 | 83.2% | 61.2% |
| 2755883 | 331.19.1.1 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin | 0.53 | 32.0 | 3.81e-01 | 93.4% | 89.1% |
| 3254948 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.53 | 48.0 | 4.12e-01 | 99.3% | 97.7% |
| 3914708 | 109.4.1.25 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DIL | 0.53 | 42.0 | 3.03e-01 | 84.7% | 37.5% |
| 3387232 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.51 | 36.0 | 4.07e-01 | 83.2% | 97.0% |
| 3857670 | 633.23.1.35 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Clarin-2 | 0.51 | 46.0 | 4.00e-01 | 100.0% | 85.6% |
| 3480535 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 35.0 | 3.97e-01 | 99.3% | 92.4% |
| 3250807 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.51 | 46.0 | 4.10e-01 | 100.0% | 90.5% |
| 4057882 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.51 | 33.0 | 3.83e-01 | 92.0% | 89.0% |
| 3976843 | 9.11.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC | 0.51 | 31.0 | 3.66e-01 | 70.1% | 92.1% |
D2
medium
residues 143-178
Domain cluster:
representative