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pre3_saliva_scaffold_3_prodigal-single.1__X__X__00149
Bact-Virpre3_saliva_scaffold_3_prodigal-single.1__X__X__00149
Identity
- Kingdom:
- phage
Quality
68.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-87
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3askA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 48.0 | 5.44e-01 | 90.6% | 88.7% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 44.0 | 5.08e-01 | 90.6% | 83.9% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 42.0 | 4.51e-01 | 85.9% | 68.1% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 42.0 | 4.53e-01 | 85.9% | 69.0% |
| 3meuB02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 44.0 | 4.67e-01 | 92.9% | 87.8% |
| 2w1zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 47.0 | 3.97e-01 | 96.5% | 50.4% |
| 2cmgA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.58 | 33.0 | 4.02e-01 | 80.0% | 92.2% |
| 1inlC02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.58 | 34.0 | 3.77e-01 | 80.0% | 75.0% |
| 4g1vA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 42.0 | 3.73e-01 | 76.5% | 78.8% |
| 1cqxA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 41.0 | 3.78e-01 | 76.5% | 77.5% |
| 6ygnA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 34.0 | 3.22e-01 | 77.6% | 49.1% |
| 3hl8A02 | 3.30.1520.20 | Alpha Beta › 2-Layer Sandwich › PX Domain › Exonuclease ExoI, domain 2 | 0.55 | 49.0 | 4.19e-01 | 97.6% | 64.9% |
| 4wqmA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 40.0 | 3.87e-01 | 77.6% | 76.5% |
| 3q5zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 47.0 | 4.24e-01 | 96.5% | 79.3% |
| 2htdB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 47.0 | 4.20e-01 | 98.8% | 91.9% |
| 5escA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 46.0 | 4.19e-01 | 97.6% | 97.5% |
| 4ft4B01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.54 | 46.0 | 3.82e-01 | 94.1% | 78.7% |
| 7cceA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.54 | 45.0 | 3.72e-01 | 91.8% | 54.3% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 38.0 | 3.14e-01 | 95.3% | 38.7% |
| 6mv2A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 37.0 | 3.47e-01 | 72.9% | 81.0% |
| 5z8lA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.53 | 44.0 | 3.93e-01 | 90.6% | 66.4% |
| 3ub1A01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 45.0 | 3.89e-01 | 95.3% | 83.8% |
| 3hmzA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 45.0 | 3.55e-01 | 98.8% | 74.3% |
| 5ylyA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 39.0 | 3.56e-01 | 80.0% | 80.4% |
| 2eixA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 39.0 | 3.64e-01 | 80.0% | 77.4% |
| 2xnjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 37.0 | 3.47e-01 | 75.3% | 78.8% |
| 2oc3A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 37.0 | 2.68e-01 | 77.6% | 66.3% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3741680 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 44.0 | 5.30e-01 | 84.7% | 89.1% |
| 3935716 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.75 | 49.0 | 5.18e-01 | 90.6% | 76.0% |
| 4049824 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.74 | 47.0 | 4.27e-01 | 94.1% | 48.7% |
| 4271974 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.73 | 43.0 | 4.88e-01 | 85.9% | 78.1% |
| 2675820 | 4.1.1.93 ↗ | beta barrels › SH3 › SH3 › SH3 › 40S_S4_C | 0.72 | 41.0 | 4.02e-01 | 87.1% | 52.7% |
| 3926120 | 4.1.1.169 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4819 | 0.70 | 48.0 | 3.97e-01 | 94.1% | 41.4% |
| 3302166 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.70 | 45.0 | 5.08e-01 | 90.6% | 86.2% |
| 3629536 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 45.0 | 4.39e-01 | 90.6% | 58.9% |
| 5061113 | 375.1.1.299 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf | 0.70 | 44.0 | 5.17e-01 | 89.4% | 98.2% |
| 4968081 | 375.1.1.299 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf | 0.67 | 43.0 | 5.02e-01 | 90.6% | 100.0% |
| 3210555 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.66 | 46.0 | 3.05e-01 | 97.6% | 17.5% |
| 3176265 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.65 | 47.0 | 3.87e-01 | 94.1% | 41.9% |
| 3549321 | 4.11.1.5 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 | 0.64 | 47.0 | 3.84e-01 | 94.1% | 41.2% |
| 4991059 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 38.0 | 4.79e-01 | 81.2% | 100.0% |
| 3768347 | 4.1.1.230 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7030 | 0.64 | 44.0 | 4.93e-01 | 91.8% | 92.3% |
| 3923766 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 54.0 | 4.89e-01 | 94.1% | 77.4% |
| 4929262 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.63 | 46.0 | 3.73e-01 | 94.1% | 41.3% |
| 2866962 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.62 | 44.0 | 4.10e-01 | 92.9% | 59.3% |
| 4642857 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 46.0 | 4.70e-01 | 97.6% | 91.3% |
| 3521904 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 46.0 | 4.51e-01 | 91.8% | 78.9% |
| 3503439 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.57 | 48.0 | 3.88e-01 | 91.8% | 48.8% |
| 3621303 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 47.0 | 4.07e-01 | 94.1% | 58.5% |
| 2582102 | 3338.2.1.2 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin | 0.57 | 51.0 | 4.47e-01 | 100.0% | 66.7% |
| 3894729 | 4.1.1.461 ↗ | beta barrels › SH3 › SH3 › SH3 › zf-CCCH | 0.57 | 46.0 | 4.52e-01 | 88.2% | 87.8% |
| 5024617 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.57 | 47.0 | 4.52e-01 | 100.0% | 80.0% |
| 4982354 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.56 | 36.0 | 4.04e-01 | 90.6% | 87.7% |
| 3713672 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 41.0 | 3.83e-01 | 94.1% | 60.9% |
| 4017600 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.55 | 44.0 | 2.86e-01 | 87.1% | 26.3% |
| 5080798 | 4.17.1.0 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like | 0.54 | 38.0 | 3.99e-01 | 90.6% | 84.0% |
| 3605922 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 39.0 | 3.72e-01 | 92.9% | 65.0% |
| 3683487 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.54 | 45.0 | 3.53e-01 | 90.6% | 45.1% |
| 3710893 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 45.0 | 3.87e-01 | 92.9% | 59.2% |
| 3836457 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.53 | 45.0 | 3.72e-01 | 91.8% | 52.7% |
| 3783352 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 44.0 | 2.82e-01 | 92.9% | 27.0% |
| 3716622 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 43.0 | 2.67e-01 | 91.8% | 27.3% |
| 3209104 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 40.0 | 2.73e-01 | 89.4% | 23.2% |
| 3984883 | 274.1.1.4 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI | 0.51 | 37.0 | 3.39e-01 | 98.8% | 57.4% |