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pre3_saliva_scaffold_3_prodigal-single.1__X__X__00151
Bact-Virpre3_saliva_scaffold_3_prodigal-single.1__X__X__00151
Identity
- Kingdom:
- phage
Quality
70.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-158
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ecrB03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.68 | 43.0 | 5.12e-01 | 70.0% | 94.1% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.63 | 45.0 | 4.55e-01 | 72.7% | 94.6% |
| 1in0A02 | 3.30.70.990 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YajQ-like, domain 2 | 0.60 | 27.0 | 3.50e-01 | 100.0% | 71.7% |
| 4jgwA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.57 | 29.0 | 2.90e-01 | 71.3% | 46.8% |
| 2bolA03 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 27.0 | 3.31e-01 | 92.7% | 73.1% |
| 2nlvA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.54 | 31.0 | 3.52e-01 | 98.0% | 73.2% |
| 1vi7A01 | 3.30.230.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Impact, N-terminal domain | 0.53 | 35.0 | 3.73e-01 | 85.3% | 74.1% |
| 1aq3A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.53 | 42.0 | 4.45e-01 | 84.0% | 99.2% |
| 3uezC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 28.0 | 3.72e-01 | 80.0% | 96.4% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.51 | 40.0 | 4.27e-01 | 84.0% | 99.2% |
| 3ejvA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 36.0 | 3.56e-01 | 71.3% | 99.4% |
| 2rfrA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 3.84e-01 | 79.3% | 88.3% |
| 3bp6B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 29.0 | 3.78e-01 | 80.7% | 98.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3173251 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.66 | 47.0 | 4.49e-01 | 72.0% | 90.0% |
| 4026006 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.64 | 34.0 | 4.49e-01 | 85.3% | 95.0% |
| 3933957 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.63 | 45.0 | 4.44e-01 | 72.7% | 91.3% |
| 4990980 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.63 | 34.0 | 4.11e-01 | 82.0% | 81.1% |
| 3166002 | 7503.1.1.13 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › Lipoprotein_16 | 0.62 | 43.0 | 4.24e-01 | 72.0% | 80.6% |
| 5075730 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.58 | 36.0 | 4.11e-01 | 94.7% | 80.9% |
| 4976732 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.55 | 41.0 | 3.14e-01 | 77.3% | 59.1% |
| 4951664 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.54 | 39.0 | 3.93e-01 | 82.7% | 73.3% |
| 4640369 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.54 | 27.0 | 3.17e-01 | 84.7% | 64.8% |
| 3380753 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.52 | 26.0 | 3.25e-01 | 82.0% | 76.7% |
| 3706182 | 3270.1.1.0 ↗ | a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase | 0.52 | 33.0 | 3.97e-01 | 91.3% | 97.0% |
| 3789178 | 5.1.2.20 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BMT | 0.52 | 42.0 | 2.92e-01 | 88.0% | 37.9% |
| 3608538 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 40.0 | 3.67e-01 | 82.0% | 66.7% |