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pre3_saliva_scaffold_5_prodigal-single.1__X__X__00213
Bact-Virpre3_saliva_scaffold_5_prodigal-single.1__X__X__00213
Identity
- Kingdom:
- phage
Quality
62.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 120-236
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fji101 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.77 | 61.0 | 4.96e-01 | 82.9% | 78.0% |
| 2a2fX02 | 1.20.58.670 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D | 0.69 | 51.0 | 5.03e-01 | 79.5% | 83.7% |
| 2rekA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.67 | 55.0 | 4.82e-01 | 88.0% | 79.7% |
| 4gywA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.66 | 49.0 | 5.10e-01 | 100.0% | 85.7% |
| 1s0pA01 | 1.25.40.330 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Adenylate cyclase-associated CAP, N-terminal domain | 0.64 | 48.0 | 4.28e-01 | 79.5% | 71.9% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 44.0 | 4.68e-01 | 72.6% | 90.2% |
| 3zojA00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.61 | 48.0 | 3.74e-01 | 83.8% | 86.3% |
| 4cgrB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 50.0 | 4.32e-01 | 90.6% | 84.8% |
| 4jhrB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 52.0 | 3.97e-01 | 100.0% | 39.1% |
| 4epzA00 | 1.25.40.810 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ | 0.60 | 45.0 | 4.15e-01 | 100.0% | 60.4% |
| 5olkB01 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.59 | 50.0 | 3.88e-01 | 94.9% | 75.6% |
| 3cqcB01 | 1.20.58.1380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 38.0 | 4.25e-01 | 73.5% | 86.7% |
| 1t5jA00 | 1.10.4080.10 | Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 | 0.57 | 51.0 | 3.79e-01 | 99.1% | 71.1% |
| 3peuB00 | 1.25.40.510 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › GLE1-like | 0.57 | 50.0 | 3.75e-01 | 98.3% | 76.9% |
| 2v5cA03 | 1.20.58.460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like | 0.55 | 42.0 | 4.09e-01 | 80.3% | 94.6% |
| 3n71A03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 44.0 | 3.65e-01 | 100.0% | 49.8% |
| 3dd7C00 | 1.20.120.1870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Fic/DOC protein, Fido domain | 0.53 | 38.0 | 3.81e-01 | 94.0% | 71.3% |
| 1tqgA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.52 | 34.0 | 3.62e-01 | 73.5% | 73.3% |
| 7p5hB03 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.52 | 37.0 | 4.13e-01 | 78.6% | 97.8% |
| 3k66A01 | 1.20.120.770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain | 0.52 | 44.0 | 3.66e-01 | 92.3% | 95.2% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 39.0 | 3.67e-01 | 76.9% | 90.6% |
| 4iluA02 | 1.20.58.1290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain | 0.52 | 36.0 | 3.71e-01 | 80.3% | 75.7% |
| 1quuA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 36.0 | 3.54e-01 | 71.8% | 83.3% |
| 4w8pA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.51 | 38.0 | 3.71e-01 | 76.9% | 92.3% |
| 1vqrD00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.51 | 41.0 | 3.21e-01 | 88.9% | 86.5% |
| 2c2uA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 38.0 | 3.39e-01 | 81.2% | 94.9% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3365808 | 109.4.1.1475 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27629 | 0.69 | 61.0 | 4.29e-01 | 96.6% | 49.9% |
| 3232893 | 601.1.1.73 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF19 | 0.64 | 51.0 | 4.58e-01 | 84.6% | 97.0% |
| 4544593 | 7078.1.1.0 ↗ | alpha superhelices › C-terminal domain of SidJ › C-terminal domain of SidJ › C-terminal domain of SidJ | 0.64 | 47.0 | 4.80e-01 | 85.5% | 78.3% |
| 3277674 | 109.3.1.377 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF26994 | 0.63 | 54.0 | 5.07e-01 | 93.2% | 78.6% |
| 3649986 | 109.4.1.58 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Not1 | 0.63 | 55.0 | 3.58e-01 | 95.7% | 32.0% |
| 3764055 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 56.0 | 4.09e-01 | 100.0% | 38.8% |
| 4680103 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 55.0 | 3.67e-01 | 100.0% | 32.2% |
| 4959781 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.62 | 53.0 | 3.85e-01 | 94.9% | 59.4% |
| 3853711 | 109.4.1.1224 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_DOCK9 | 0.62 | 54.0 | 3.86e-01 | 96.6% | 53.7% |
| 3257076 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 53.0 | 4.99e-01 | 100.0% | 79.3% |
| 3419146 | 3948.1.1.0 ↗ | alpha bundles › V(D)J recombination-activating protein 1 helical bundle domain › V(D)J recombination-activating protein 1 helical bundle domain › V(D)J recombination-activating protein 1 helical bundle domain | 0.59 | 44.0 | 3.66e-01 | 77.8% | 77.6% |
| 5055626 | 1076.1.1.0 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related | 0.58 | 43.0 | 3.98e-01 | 76.9% | 80.0% |
| 3610948 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 49.0 | 4.72e-01 | 90.6% | 95.4% |
| 3592328 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 50.0 | 3.89e-01 | 98.3% | 63.3% |
| 3244449 | 3755.3.1.408 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Zw10_N | 0.56 | 45.0 | 4.02e-01 | 89.7% | 83.3% |
| 5056995 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 50.0 | 4.57e-01 | 100.0% | 79.9% |
| 3516505 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 49.0 | 3.96e-01 | 100.0% | 58.3% |
| 3167154 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 47.0 | 3.80e-01 | 100.0% | 70.4% |
| 3274860 | 109.25.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A | 0.54 | 45.0 | 3.98e-01 | 95.7% | 68.6% |
| 3929321 | 109.4.1.934 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ATR | 0.53 | 45.0 | 3.94e-01 | 95.7% | 59.5% |
| 434095 | 109.4.1.1501 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, TIP120, HEAT_EZ, HEAT_GCN1, TPR_CAND1 | 0.53 | 46.0 | 3.50e-01 | 98.3% | 52.6% |
| 3711015 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 46.0 | 3.75e-01 | 100.0% | 70.0% |
| 3477472 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 43.0 | 4.43e-01 | 91.5% | 94.5% |
| 4024825 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 45.0 | 3.97e-01 | 99.1% | 83.2% |
| 3963163 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.52 | 39.0 | 3.58e-01 | 79.5% | 96.8% |
| 3576126 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.51 | 39.0 | 3.83e-01 | 81.2% | 96.8% |
| 3586713 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 44.0 | 4.10e-01 | 100.0% | 97.4% |
| 3602414 | 2004.1.1.411 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T1RH-like_C | 0.51 | 42.0 | 4.20e-01 | 89.7% | 93.3% |
| 3276573 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.50 | 44.0 | 3.44e-01 | 99.1% | 78.9% |
D2
medium
residues 296-377