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pre3_saliva_scaffold_6_prodigal-single.1__X__X__00026

Bact-Vir

pre3_saliva_scaffold_6_prodigal-single.1__X__X__00026

Identity

Kingdom:
phage

Quality

78.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-56
PDB
Domain cluster: representative
D2 high residues 64-133
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 40.0 4.42e-01 98.6% 89.1%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.57 38.0 4.23e-01 100.0% 96.0%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.54 43.0 4.23e-01 90.0% 94.8%
1upsA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 45.0 3.74e-01 100.0% 94.7%
2od0A00 3.30.1460.30 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone 0.52 39.0 3.48e-01 87.1% 55.3%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.52 39.0 2.85e-01 87.1% 74.1%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.51 34.0 3.84e-01 98.6% 96.1%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 35.0 3.54e-01 100.0% 73.9%
2v05A01 2.10.270.20 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › 0.50 36.0 2.99e-01 75.7% 81.2%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3666644 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.71 37.0 4.78e-01 85.7% 100.0%
3493489 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.66 39.0 4.50e-01 81.4% 82.0%
5014250 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 37.0 3.53e-01 95.7% 47.5%
4425056 64.1.1.4 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW_1 0.63 34.0 4.20e-01 74.3% 100.0%
4936051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 42.0 4.60e-01 97.1% 90.9%
3482645 375.8.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.60 30.0 4.04e-01 84.3% 97.1%
5031337 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.60 33.0 4.19e-01 87.1% 94.9%
3251559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 39.0 4.35e-01 97.1% 96.0%
3999896 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 40.0 4.40e-01 100.0% 92.7%
3839750 2003.1.15.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Glycosyltransferase Maf N-terminal domain 0.57 45.0 3.26e-01 87.1% 61.9%
3357726 386.1.1.207 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED_2 0.57 43.0 4.24e-01 81.4% 97.3%
3612017 220.4.1.6 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › Peptidase_M8 0.55 46.0 3.81e-01 95.7% 79.3%
3607308 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.55 46.0 2.86e-01 95.7% 30.2%
4865239 101.1.2.28 ↗ alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.55 29.0 3.66e-01 85.7% 92.3%
3064081 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.54 33.0 3.57e-01 90.0% 72.4%
3706520 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.53 42.0 2.68e-01 94.3% 29.7%
3719115 220.4.1.6 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › Peptidase_M8 0.53 43.0 3.44e-01 94.3% 83.1%
3952778 101.1.2.574 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26520 0.52 33.0 3.18e-01 90.0% 52.9%
3286662 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.52 36.0 3.29e-01 75.7% 64.0%
3898198 220.1.1.184 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP 0.51 44.0 3.73e-01 100.0% 81.6%
3448558 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.51 42.0 2.59e-01 98.6% 47.5%
3961639 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.51 35.0 3.71e-01 98.6% 83.3%
3781329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.51e-01 97.1% 66.3%
4049910 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.51 32.0 3.77e-01 84.3% 100.0%
4948719 101.1.2.28 ↗ alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.50 37.0 3.25e-01 77.1% 93.0%
3710931 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.50 42.0 2.87e-01 100.0% 25.7%