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pre3_saliva_scaffold_6_prodigal-single.1__X__X__00039
Bact-Virpre3_saliva_scaffold_6_prodigal-single.1__X__X__00039
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-137
Domain cluster:
rep: ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00167__D22-125
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ut7B01 | 2.170.150.80 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain | 0.63 | 35.0 | 3.47e-01 | 73.9% | 50.4% |
| 5da9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 37.0 | 2.63e-01 | 86.1% | 19.6% |
| 2hngA00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.61 | 44.0 | 4.33e-01 | 79.1% | 68.8% |
| 2n8xA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.61 | 49.0 | 4.36e-01 | 87.0% | 72.3% |
| 5aj3E01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.58 | 39.0 | 4.54e-01 | 83.5% | 98.8% |
| 4gn2A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.58 | 50.0 | 3.92e-01 | 93.0% | 90.4% |
| 3ff2A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 33.0 | 3.31e-01 | 74.8% | 52.1% |
| 2i99A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.58 | 46.0 | 4.23e-01 | 91.3% | 64.7% |
| 3bf2A00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.57 | 46.0 | 4.52e-01 | 87.8% | 92.8% |
| 2ichA01 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.57 | 47.0 | 4.04e-01 | 88.7% | 82.7% |
| 5dl5A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.56 | 46.0 | 3.20e-01 | 91.3% | 38.9% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.56 | 47.0 | 4.33e-01 | 94.8% | 75.5% |
| 2ciuA00 | 3.10.450.320 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 | 0.55 | 42.0 | 4.17e-01 | 90.4% | 74.8% |
| 5tseA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.55 | 45.0 | 4.28e-01 | 88.7% | 89.7% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 39.0 | 4.05e-01 | 85.2% | 78.4% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 41.0 | 3.67e-01 | 82.6% | 62.9% |
| 3ub1A01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 37.0 | 3.51e-01 | 78.3% | 59.6% |
| 2c4iA01 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.53 | 43.0 | 4.29e-01 | 87.0% | 87.3% |
| 2gtlO02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 40.0 | 3.62e-01 | 82.6% | 64.4% |
| 2rckA01 | 3.15.10.30 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain | 0.52 | 36.0 | 2.98e-01 | 70.4% | 59.6% |
| 1qj8A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 42.0 | 3.92e-01 | 89.6% | 91.2% |
| 2fxtA00 | 3.10.450.240 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 35.0 | 3.01e-01 | 71.3% | 46.9% |
| 2w5nA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.51 | 41.0 | 2.86e-01 | 86.1% | 30.4% |
| 1q47A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 42.0 | 2.84e-01 | 93.0% | 34.3% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 37.0 | 3.79e-01 | 86.1% | 80.9% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3935161 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.70 | 41.0 | 4.33e-01 | 73.9% | 63.8% |
| 3597592 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.66 | 45.0 | 3.68e-01 | 77.4% | 38.5% |
| 3700510 | 243.1.1.94 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26532 | 0.66 | 46.0 | 3.80e-01 | 80.9% | 40.5% |
| 3934735 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.66 | 39.0 | 4.20e-01 | 75.7% | 68.0% |
| 3773175 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.64 | 46.0 | 3.89e-01 | 74.8% | 45.9% |
| 3372143 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.63 | 42.0 | 4.16e-01 | 74.8% | 63.2% |
| 3724449 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.62 | 39.0 | 4.33e-01 | 87.0% | 80.0% |
| 5022112 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.62 | 51.0 | 4.29e-01 | 87.8% | 83.7% |
| 3890886 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.62 | 38.0 | 4.40e-01 | 70.4% | 87.5% |
| 3284948 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 40.0 | 4.52e-01 | 80.9% | 89.4% |
| 3173251 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.60 | 51.0 | 4.50e-01 | 93.0% | 69.4% |
| 3437564 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.60 | 43.0 | 3.81e-01 | 74.8% | 72.1% |
| 3438809 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 43.0 | 3.76e-01 | 73.9% | 73.5% |
| 3840079 | 4998.1.1.1 ↗ | beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 | 0.59 | 45.0 | 4.08e-01 | 90.4% | 60.7% |
| 3177367 | 330.1.1.4 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 | 0.58 | 42.0 | 3.84e-01 | 80.0% | 55.5% |
| 3514245 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.57 | 41.0 | 4.17e-01 | 78.3% | 74.8% |
| 3941713 | 243.1.1.6 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 | 0.57 | 38.0 | 3.59e-01 | 74.8% | 55.7% |
| 3802939 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 40.0 | 3.53e-01 | 71.3% | 71.5% |
| 3659736 | 5.1.3.19 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira | 0.57 | 43.0 | 3.59e-01 | 80.9% | 45.4% |
| 3627039 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.57 | 39.0 | 3.04e-01 | 75.7% | 32.9% |
| 4419521 | 243.1.1.108 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2_YvbJ | 0.56 | 38.0 | 3.67e-01 | 78.3% | 59.3% |
| 3694872 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 46.0 | 3.09e-01 | 87.0% | 34.1% |
| 3293799 | 243.1.1.24 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › ARC6-like_IMS | 0.55 | 36.0 | 3.37e-01 | 75.7% | 50.7% |
| 4084508 | 243.1.1.92 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26366 | 0.55 | 40.0 | 3.67e-01 | 75.7% | 65.2% |
| 3764790 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.55 | 35.0 | 3.84e-01 | 73.0% | 77.9% |
| 4492722 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.54 | 43.0 | 4.11e-01 | 87.0% | 73.6% |
| 4979861 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.54 | 43.0 | 4.36e-01 | 87.8% | 92.2% |
| 4989300 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.53 | 44.0 | 4.32e-01 | 91.3% | 84.8% |
| 4948537 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.53 | 35.0 | 2.49e-01 | 87.8% | 22.1% |
| 4956104 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.52 | 41.0 | 4.20e-01 | 87.0% | 90.0% |
| 3957386 | 883.1.1.0 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like | 0.51 | 43.0 | 3.73e-01 | 91.3% | 60.0% |
| 3925444 | 5087.3.1.0 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C | 0.51 | 44.0 | 3.63e-01 | 93.9% | 51.7% |
| 3285689 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.51 | 39.0 | 4.11e-01 | 87.8% | 94.0% |
| 2582184 | 5087.3.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd | 0.50 | 43.0 | 3.29e-01 | 93.9% | 51.1% |
| 3235810 | 5087.3.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd | 0.50 | 43.0 | 3.30e-01 | 94.8% | 51.5% |