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pre3_saliva_scaffold_6_prodigal-single.1__X__X__00060
Bact-Virpre3_saliva_scaffold_6_prodigal-single.1__X__X__00060
Identity
- Kingdom:
- phage
Quality
63.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 47-101
Domain cluster:
rep: ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00143__D39-92
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4nocD00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.76 | 50.0 | 3.62e-01 | 100.0% | 26.4% |
| 2odkA00 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.75 | 49.0 | 5.11e-01 | 98.2% | 74.0% |
| 4esyA00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.72 | 48.0 | 3.40e-01 | 100.0% | 23.3% |
| 3g5oA01 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.72 | 49.0 | 5.41e-01 | 100.0% | 92.9% |
| 2o16B00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.71 | 46.0 | 3.47e-01 | 100.0% | 27.4% |
| 3fioA00 | 3.90.1280.20 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › | 0.70 | 46.0 | 4.25e-01 | 100.0% | 52.9% |
| 2pfiB01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.69 | 45.0 | 3.37e-01 | 100.0% | 26.8% |
| 2rc3C00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.69 | 45.0 | 3.44e-01 | 100.0% | 28.9% |
| 4cooA03 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.68 | 43.0 | 3.21e-01 | 100.0% | 25.5% |
| 3fnaB00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.67 | 44.0 | 3.39e-01 | 100.0% | 30.1% |
| 1pbjA00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.67 | 46.0 | 3.59e-01 | 100.0% | 33.6% |
| 3pc3A03 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.66 | 45.0 | 3.35e-01 | 100.0% | 27.8% |
| 2fr5A00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.59 | 43.0 | 3.27e-01 | 100.0% | 32.4% |
| 2ql3A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 37.0 | 3.12e-01 | 92.7% | 39.4% |
| 1v47A01 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.54 | 44.0 | 3.49e-01 | 100.0% | 58.6% |
| 4q4hA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 41.0 | 2.76e-01 | 94.5% | 67.3% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4010815 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.83 | 50.0 | 5.27e-01 | 100.0% | 68.0% |
| 4948837 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.78 | 49.0 | 3.71e-01 | 100.0% | 28.8% |
| 3954634 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.77 | 50.0 | 4.28e-01 | 100.0% | 44.0% |
| 4985164 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.76 | 47.0 | 3.53e-01 | 100.0% | 27.1% |
| 4979480 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.74 | 47.0 | 3.56e-01 | 100.0% | 28.8% |
| 4616210 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.74 | 47.0 | 4.74e-01 | 98.2% | 65.5% |
| 3248897 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.73 | 48.0 | 3.45e-01 | 100.0% | 24.8% |
| 3733162 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.73 | 47.0 | 3.30e-01 | 100.0% | 21.1% |
| 3600783 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.73 | 47.0 | 3.41e-01 | 100.0% | 24.2% |
| 5056282 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.72 | 49.0 | 3.65e-01 | 100.0% | 30.0% |
| 134503 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.72 | 49.0 | 4.09e-01 | 100.0% | 42.9% |
| 4995095 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.72 | 47.0 | 3.53e-01 | 100.0% | 28.5% |
| 4976417 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.71 | 47.0 | 3.59e-01 | 100.0% | 30.4% |
| 5004289 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.70 | 45.0 | 3.44e-01 | 100.0% | 28.8% |
| 4965468 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.69 | 45.0 | 3.47e-01 | 100.0% | 29.6% |
| 4937553 | 2008.1.1.31 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VRR_NUC | 0.58 | 39.0 | 3.19e-01 | 100.0% | 34.8% |
| 4568943 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.53 | 43.0 | 3.03e-01 | 100.0% | 40.2% |
| 3735360 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.52 | 37.0 | 3.00e-01 | 89.1% | 38.2% |
D2
high
residues 127-179
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kxpD02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.53 | 36.0 | 3.26e-01 | 79.2% | 46.6% |