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pre3_saliva_scaffold_6_prodigal-single.1__X__X__00092

Bact-Vir

pre3_saliva_scaffold_6_prodigal-single.1__X__X__00092

Identity

Kingdom:
phage

Quality

59.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 593-669
PDB
D2 medium residues 70-161_691-797
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a2fX02 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.52 25.0 3.11e-01 89.4% 71.3%
1w33A00 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.51 30.0 3.16e-01 99.0% 60.8%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4676609 4038.1.1.10 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Portal_Mu 0.57 54.0 4.59e-01 100.0% 79.3%
3675163 3881.1.1.1 ↗ alpha bundles › CNOT9 binding domain CN9BD (DUF3819) › CNOT9 binding domain CN9BD (DUF3819) › CNOT9 binding domain CN9BD (DUF3819) › DUF3819 0.55 36.0 3.71e-01 82.4% 67.2%
4955590 604.39.1.0 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.51 29.0 3.12e-01 85.4% 62.3%
D3 medium residues 263-340
PDB
D4 medium residues 485-556
PDB
D5 medium residues 812-920
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5078087 3646.1.1.1 ↗ alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.59 41.0 3.17e-01 71.6% 91.3%