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pre3_saliva_scaffold_6_prodigal-single.1__X__X__00100
Bact-Virpre3_saliva_scaffold_6_prodigal-single.1__X__X__00100
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-123
Domain cluster:
rep: pre3_saliva_scaffold_6_prodigal-single.1__X__X__00027__D3-113
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6u8yK01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.63 | 44.0 | 4.05e-01 | 100.0% | 55.8% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.58 | 24.0 | 3.60e-01 | 88.4% | 91.7% |
| 7z0sE01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.58 | 40.0 | 4.12e-01 | 100.0% | 73.1% |
| 3n54B01 | 6.20.190.10 | Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 | 0.58 | 25.0 | 3.42e-01 | 99.2% | 78.7% |
| 4i2yA01 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.54 | 39.0 | 3.08e-01 | 73.6% | 56.8% |
| 3l20A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.54 | 48.0 | 4.48e-01 | 100.0% | 90.3% |
| 4dkmA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.53 | 38.0 | 3.13e-01 | 73.6% | 98.6% |
| 2dd7A00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.52 | 39.0 | 3.16e-01 | 76.9% | 97.2% |
| 4ge6A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 39.0 | 2.97e-01 | 79.3% | 62.4% |
| 4r3aA02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.52 | 42.0 | 4.07e-01 | 91.7% | 94.4% |
| 3vhxF00 | 2.60.40.4330 | Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain | 0.51 | 38.0 | 4.06e-01 | 98.3% | 91.2% |
| 4mb4A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 32.0 | 3.75e-01 | 98.3% | 97.5% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5050697 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.73 | 29.0 | 4.36e-01 | 94.2% | 88.0% |
| 3368394 | 4325.1.1.11 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF27041 | 0.62 | 28.0 | 3.11e-01 | 93.4% | 51.6% |
| 4379266 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.60 | 47.0 | 4.18e-01 | 99.2% | 58.8% |
| 3390712 | 827.1.1.0 ↗ | a+b two layers › Integrin beta tail domain › Integrin beta tail domain › Integrin beta tail domain | 0.58 | 36.0 | 4.04e-01 | 75.2% | 81.1% |
| 3977220 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.56 | 39.0 | 3.01e-01 | 70.2% | 41.9% |
| 4015390 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.55 | 34.0 | 3.58e-01 | 92.6% | 66.4% |
| 4608418 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.54 | 31.0 | 3.54e-01 | 89.3% | 76.5% |
| 2834612 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.52 | 38.0 | 3.08e-01 | 76.0% | 94.7% |
| 3658408 | 4325.1.1.13 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF4371 | 0.52 | 26.0 | 3.10e-01 | 100.0% | 70.7% |
| 3699932 | 2003.1.5.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TPMT | 0.52 | 36.0 | 2.87e-01 | 99.2% | 34.5% |
| 3286415 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.52 | 42.0 | 4.03e-01 | 90.9% | 86.8% |
| 5005180 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.51 | 35.0 | 3.47e-01 | 100.0% | 66.4% |
| 3282810 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.51 | 41.0 | 4.07e-01 | 90.1% | 95.4% |
| 4946160 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.50 | 27.0 | 3.44e-01 | 70.2% | 100.0% |