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pre3_saliva_scaffold_6_prodigal-single.1__X__X__00120
Bact-Virpre3_saliva_scaffold_6_prodigal-single.1__X__X__00120
Identity
- Kingdom:
- phage
Quality
88.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-93
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3uumA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 47.0 | 4.22e-01 | 90.9% | 88.5% |
| 2c7yA00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.56 | 40.0 | 2.65e-01 | 75.0% | 36.6% |
| 2d2sA01 | 1.20.58.1210 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain | 0.52 | 40.0 | 3.64e-01 | 89.8% | 61.2% |
| 3mayB00 | 1.20.20.20 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › Haemophore, haem-binding domain | 0.52 | 39.0 | 3.85e-01 | 81.8% | 86.0% |
| 1ug8A00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.52 | 40.0 | 4.06e-01 | 96.6% | 86.2% |
| 2zueA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.52 | 38.0 | 3.52e-01 | 100.0% | 58.8% |
| 5j1gA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 44.0 | 3.32e-01 | 96.6% | 82.0% |
| 1elwA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.50 | 35.0 | 3.23e-01 | 94.3% | 54.7% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 338973 | 4970.1.1.5 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › vRNAP_dom_2 | 0.58 | 46.0 | 4.11e-01 | 84.1% | 71.7% |
| 4122483 | 4018.1.1.1 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase | 0.56 | 40.0 | 3.38e-01 | 75.0% | 91.6% |
| 4962836 | 5001.1.1.292 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › HisKA_7TM | 0.51 | 46.0 | 3.35e-01 | 100.0% | 77.6% |
| 3276538 | 109.4.1.2792 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SET | 0.51 | 40.0 | 2.56e-01 | 85.2% | 17.5% |
| 3574196 | 864.1.1.1 ↗ | a+b two layers › DLC › DLC › DLC › Dynein_light | 0.51 | 33.0 | 3.81e-01 | 70.5% | 98.3% |