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pre3_saliva_scaffold_6_prodigal-single.1__X__X__00129
Bact-Virpre3_saliva_scaffold_6_prodigal-single.1__X__X__00129
Identity
- Kingdom:
- phage
Quality
80.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 164-324
Domain cluster:
rep: pre3_saliva_scaffold_6_prodigal-single.1__X__X__00130__D177-327
D2
high
residues 326-485
Domain cluster:
rep: pre3_saliva_scaffold_6_prodigal-single.1__X__X__00130__D329-525
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4r0mA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.63 | 34.0 | 4.00e-01 | 100.0% | 75.0% |
| 6o6eB02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.59 | 30.0 | 3.49e-01 | 100.0% | 68.2% |
| 2rrlA01 | 3.30.750.140 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.59 | 31.0 | 3.56e-01 | 100.0% | 67.8% |
| 7x4qA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.55 | 39.0 | 4.07e-01 | 100.0% | 77.5% |
| 7x4pA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.53 | 42.0 | 4.30e-01 | 100.0% | 86.0% |
| 3owrA00 | 2.60.40.4120 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 39.0 | 4.36e-01 | 99.4% | 97.6% |
| 3kxwA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.52 | 35.0 | 3.97e-01 | 99.4% | 90.3% |
| 2h2yA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.51 | 33.0 | 3.75e-01 | 96.9% | 88.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4382942 | 327.4.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N | 0.59 | 33.0 | 4.23e-01 | 96.2% | 95.6% |
| 4022396 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.58 | 36.0 | 3.95e-01 | 100.0% | 73.3% |
| 5013855 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.58 | 35.0 | 4.31e-01 | 95.6% | 95.0% |
| 4021181 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.58 | 34.0 | 3.68e-01 | 100.0% | 65.7% |
| 4334459 | 327.4.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N | 0.57 | 31.0 | 4.09e-01 | 96.9% | 98.8% |
| 3989767 | 2008.1.1.152 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2130 | 0.54 | 28.0 | 2.75e-01 | 88.1% | 42.8% |
| 3635217 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.53 | 30.0 | 3.38e-01 | 100.0% | 68.8% |
| 3276222 | 316.1.1.56 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 | 0.53 | 48.0 | 4.25e-01 | 100.0% | 80.4% |
| 4678967 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.53 | 32.0 | 3.49e-01 | 100.0% | 71.1% |
| 4017786 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.53 | 30.0 | 3.47e-01 | 99.4% | 78.2% |
| 4362441 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.50 | 31.0 | 3.42e-01 | 100.0% | 74.6% |
| 1552167 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.50 | 40.0 | 3.25e-01 | 85.6% | 84.4% |
D3
medium
residues 1-161
Domain cluster:
rep: pre3_saliva_scaffold_6_prodigal-single.1__X__X__00130__D1-30_78-176
D4
medium
residues 597-694
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1uqwA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.63 | 33.0 | 3.20e-01 | 96.9% | 43.8% |
| 4ebgA00 | 3.10.450.560 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 41.0 | 4.12e-01 | 78.6% | 70.1% |
| 3rmhB00 | 2.40.50.810 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 37.0 | 3.36e-01 | 100.0% | 47.4% |
| 2r6uA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.57 | 36.0 | 3.37e-01 | 95.9% | 50.8% |
| 3aabB00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 41.0 | 4.04e-01 | 96.9% | 70.8% |
| 4pofA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 34.0 | 3.33e-01 | 99.0% | 55.8% |
| 2nwvA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.55 | 35.0 | 3.42e-01 | 83.7% | 57.1% |
| 7ztbB01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.55 | 49.0 | 4.15e-01 | 99.0% | 79.1% |
| 6bldA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.55 | 41.0 | 2.75e-01 | 80.6% | 86.5% |
| 1uuzB00 | 3.40.1420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme | 0.55 | 38.0 | 3.55e-01 | 73.5% | 59.4% |
| 4gl8A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 43.0 | 3.70e-01 | 96.9% | 53.9% |
| 2opeA00 | 3.30.540.20 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › | 0.54 | 46.0 | 4.33e-01 | 99.0% | 77.5% |
| 7cymA02 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.52 | 47.0 | 4.50e-01 | 98.0% | 100.0% |
| 3t1oA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 36.0 | 3.02e-01 | 99.0% | 38.0% |
| 3e9tB00 | 2.60.40.2030 | Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain | 0.52 | 47.0 | 4.52e-01 | 100.0% | 96.5% |
| 1hxmA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 44.0 | 4.13e-01 | 94.9% | 95.9% |
| 6w1kA01 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.51 | 46.0 | 3.29e-01 | 100.0% | 37.4% |
| 1gmeA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 37.0 | 3.28e-01 | 99.0% | 50.7% |
| 1foeC02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 42.0 | 3.56e-01 | 89.8% | 64.0% |
| 3mgxB00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.51 | 44.0 | 3.03e-01 | 100.0% | 68.0% |
| 3fq4B01 | 2.60.40.2030 | Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain | 0.50 | 45.0 | 4.29e-01 | 100.0% | 96.6% |
| 1l3wA03 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.50 | 45.0 | 4.32e-01 | 100.0% | 94.7% |
| 7skhB01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.50 | 44.0 | 4.52e-01 | 98.0% | 100.0% |
| 4fb2A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.50 | 44.0 | 2.98e-01 | 100.0% | 67.9% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5040360 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.59 | 40.0 | 4.10e-01 | 78.6% | 72.6% |
| 432602 | 2.1.1.93 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Cdc13_OB4_dimer | 0.58 | 37.0 | 3.36e-01 | 100.0% | 47.4% |
| 3669518 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.58 | 52.0 | 4.95e-01 | 99.0% | 94.8% |
| 3939873 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.56 | 40.0 | 2.94e-01 | 100.0% | 25.2% |
| 3528231 | 922.1.1.0 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat | 0.56 | 28.0 | 3.73e-01 | 100.0% | 97.9% |
| 3721847 | 5.1.4.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 | 0.55 | 41.0 | 2.55e-01 | 78.6% | 14.7% |
| 3594261 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.55 | 46.0 | 3.43e-01 | 94.9% | 35.9% |
| 3301049 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.55 | 44.0 | 4.10e-01 | 99.0% | 69.2% |
| 3900823 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.55 | 42.0 | 2.99e-01 | 94.9% | 26.1% |
| 3968061 | 274.1.1.65 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF6162 | 0.53 | 42.0 | 4.03e-01 | 99.0% | 72.9% |
| 3665991 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 47.0 | 4.08e-01 | 100.0% | 92.9% |
| 3913729 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.53 | 47.0 | 4.49e-01 | 100.0% | 98.3% |
| 3649748 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.53 | 38.0 | 3.32e-01 | 98.0% | 48.4% |
| 3491938 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 37.0 | 2.83e-01 | 96.9% | 30.8% |
| 4021163 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.52 | 46.0 | 3.46e-01 | 100.0% | 70.4% |
| 3545540 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.52 | 46.0 | 4.43e-01 | 100.0% | 94.8% |
| 5068730 | 11.1.1.351 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › K319L-like_PKD | 0.52 | 46.0 | 4.54e-01 | 100.0% | 94.3% |
| 3576703 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.52 | 47.0 | 3.93e-01 | 100.0% | 68.5% |
| 4944722 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.52 | 45.0 | 3.98e-01 | 96.9% | 73.1% |
| 3472918 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 46.0 | 4.49e-01 | 100.0% | 97.3% |
| 4943102 | 7523.1.1.3 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 | 0.51 | 45.0 | 3.78e-01 | 96.9% | 59.4% |
| 4960940 | 11.1.1.50 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta | 0.51 | 47.0 | 4.45e-01 | 100.0% | 95.7% |
| 4960945 | 11.1.1.50 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta | 0.51 | 46.0 | 4.21e-01 | 100.0% | 89.2% |
| 3893030 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 45.0 | 4.44e-01 | 99.0% | 98.1% |
| 3727588 | 2003.1.5.71 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_33 | 0.51 | 43.0 | 3.05e-01 | 95.9% | 78.5% |
| 3496421 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.51 | 46.0 | 4.29e-01 | 100.0% | 96.7% |
| 3273326 | 316.1.1.56 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 | 0.51 | 45.0 | 3.30e-01 | 96.9% | 50.4% |
| 366073 | 11.1.1.50 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta | 0.50 | 45.0 | 4.29e-01 | 100.0% | 96.6% |
| 3640355 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.50 | 42.0 | 3.64e-01 | 91.8% | 87.7% |
| 5082370 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 45.0 | 4.26e-01 | 100.0% | 98.3% |
| 3246291 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.50 | 38.0 | 3.57e-01 | 82.7% | 82.5% |