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pre3_saliva_scaffold_6_prodigal-single.1__X__X__00133

Bact-Vir

pre3_saliva_scaffold_6_prodigal-single.1__X__X__00133

Identity

Kingdom:
phage

Quality

77.6 mean pLDDT

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-183
PDB
Domain cluster: rep: BML_coassembly_scaffold_50_prodigal-single.1__X__X__00038__D347-509
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h7wA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.70 64.0 6.11e-01 98.8% 95.7%
2vfkA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.65 60.0 5.55e-01 98.8% 89.8%
2d4gA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.65 57.0 5.71e-01 97.6% 92.2%
1jh6A00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.65 59.0 5.71e-01 100.0% 88.4%
1vdxA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.63 58.0 5.57e-01 98.2% 90.8%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 23.0 3.29e-01 87.2% 78.4%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 22.0 3.11e-01 89.6% 78.4%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 24.0 3.08e-01 88.4% 70.0%
6gdxA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 25.0 3.03e-01 87.8% 64.5%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.54 21.0 2.80e-01 87.2% 64.6%
4rx6D00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 25.0 3.05e-01 90.2% 68.2%
2dt9A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 24.0 3.18e-01 87.8% 83.5%
2bj3D02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.51 22.0 2.99e-01 88.4% 76.5%
2gffA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 26.0 3.28e-01 92.1% 81.2%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 24.0 2.93e-01 90.2% 67.3%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026533 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.67 62.0 5.76e-01 98.8% 90.5%
4972958 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.66 61.0 5.87e-01 98.8% 91.8%
4982807 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.66 61.0 5.85e-01 98.8% 91.9%
4453123 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.66 59.0 5.70e-01 95.7% 90.0%
3962197 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.65 60.0 5.94e-01 98.8% 95.9%
4952280 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.65 58.0 5.69e-01 96.3% 91.1%
1869530 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.65 59.0 5.44e-01 98.8% 87.2%
276 264.1.1.4 ↗ beta barrels › LigT-like › LigT-related › LigT-related › CPDase 0.65 59.0 5.71e-01 100.0% 88.4%
1117634 264.1.1.8 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS,AKAP7_RIRII_bdg 0.65 59.0 5.28e-01 98.8% 80.0%
3531648 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.65 59.0 5.72e-01 97.6% 92.8%
4956981 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.65 59.0 5.72e-01 99.4% 91.4%
None — 0.65 59.0 5.81e-01 98.2% 92.6%
3338135 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.64 58.0 5.68e-01 100.0% 88.9%
4967857 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.64 57.0 5.53e-01 94.5% 90.0%
4991838 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.64 46.0 5.09e-01 80.5% 91.0%
5010662 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.64 59.0 5.68e-01 98.8% 90.3%
5051264 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.64 58.0 5.72e-01 97.6% 90.9%
None — 0.64 59.0 5.68e-01 99.4% 91.8%
None — 0.63 58.0 5.57e-01 98.2% 90.8%
3995136 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.63 48.0 5.01e-01 79.3% 98.7%
None — 0.62 53.0 5.27e-01 90.2% 90.6%
None — 0.62 57.0 5.50e-01 98.2% 91.1%
4968059 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.61 55.0 5.38e-01 97.0% 90.0%
4959054 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 20.0 2.74e-01 98.2% 54.1%
3832146 304.8.1.68 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF493 0.57 27.0 3.37e-01 87.2% 72.6%
4310337 304.117.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.57 21.0 3.08e-01 87.2% 74.3%
4965197 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.56 24.0 3.29e-01 88.4% 78.8%
4958500 3261.1.1.0 ↗ a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb 0.51 20.0 3.29e-01 73.2% 100.0%